Man pages for MSstatsSampleSize
Simulation tool for optimal design of high-dimensional MS-based proteomics experiment
| classification_results | Example of output from designSampleSizeClassification... |
| designSampleSizeClassification | Estimate the mean predictive accuracy and mean protein... |
| designSampleSizeClassificationPlots | Visualization for sample size calculation in classification |
| designSampleSizeHypothesisTestingPlot | Sample size calculation plot for hypothesis testing |
| designSampleSizePCAplot | PCA plot for each simulation |
| dot-classification | For each simulated dataset, calculate predictive accuracy on... |
| dot-classificationModel | Fit a classification model |
| dot-classificationPerformance | For each simulated dataset, calculate predictive accuracy on... |
| dot-logGeneration | Create log file |
| dot-randomImputation | For each protein, impute the missing values based on the... |
| dot-sampleSimulation | Simulate extended datasets for sample size estimation |
| estimateVar | Estimate the mean abundance and variance of each protein in... |
| meanSDplot | Mean-SD plot |
| MSstatsSampleSize | MSstatsSampleSize: A package for optimal design of... |
| OV_SRM_train | The training set from a study for subjects with ovarian... |
| OV_SRM_train_annotation | Annotation file for 'OV_SRM_train', |
| simulateDataset | Simulate datasets with the given number of biological... |
| simulated_datasets | Example of output from simulateDataset function |
| variance_estimation | Example of output from estimateVar function |
