MSstatsSampleSize: Simulation tool for optimal design of high-dimensional MS-based proteomics experiment

The packages estimates the variance in the input protein abundance data and simulates data with predefined number of biological replicates based on the variance estimation. It reports the mean predictive accuracy of the classifier and mean protein importance over multiple iterations of the simulation.

Package details

AuthorTing Huang [aut, cre], Meena Choi [aut], Olga Vitek [aut]
Bioconductor views Classification DifferentialExpression ExperimentalDesign MassSpectrometry PrincipalComponent Proteomics Software Visualization
MaintainerTing Huang <[email protected]>
LicenseArtistic-2.0
Version1.0.0
URL http://msstats.org
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MSstatsSampleSize")

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MSstatsSampleSize documentation built on Oct. 31, 2019, 2:22 a.m.