Simulation tool for optimal design of high-dimensional MS-based proteomics experiment

classification_results | Example of output from designSampleSizeClassification... |

designSampleSizeClassification | Estimate the mean predictive accuracy and mean protein... |

designSampleSizeClassificationPlots | Visualization for sample size calculation in classification |

designSampleSizePCAplot | PCA plot for each simulation |

dot-classification | For each simulated dataset, calculate predictive accuracy on... |

dot-logGeneration | Create log file |

dot-randomImputation | For each protein, impute the missing values based on the... |

dot-sampleSimulation | Simulate extended datasets for sample size estimation |

estimateVar | Estimate the mean abundance and variance of each protein in... |

meanSDplot | Mean-SD plot |

MSstatsSampleSize | MSstatsSampleSize: A package for optimal design of... |

OV_SRM_train | The training set from a study for subjects with ovarian... |

OV_SRM_train_annotation | Annotation file for 'OV_SRM_train', |

simulateDataset | Simulate datasets with the given number of biological... |

simulated_datasets | Example of output from simulateDataset function |

variance_estimation | Example of output from estimateVar function |

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