API for MWASTools
MWASTools: an integrated pipeline to perform metabolome-wide association studies
| Global functions | |
|---|---|
| ASP_paths | Source code |
| BH_correct | Source code |
| CV_calculation | Source code |
| CV_features | Source code |
| CV_filter | Man page Source code |
| JBA_binning | Man page Source code |
| JBA_corDistribution | Man page Source code |
| JBA_mergeClusters | Source code |
| JBA_plotBins | Man page Source code |
| KEGG_metabolic_paths | Man page |
| MS_data | Man page |
| MT_correction | Source code |
| MWAS_ChangeNames | Source code |
| MWAS_KEGG_network | Man page Source code |
| MWAS_KEGG_pathways | Man page Source code |
| MWAS_KEGG_shortestpaths | Man page Source code |
| MWAS_SummarizedExperiment | Man page Source code |
| MWAS_barplot | Man page Source code |
| MWAS_bootstrapping | Man page Source code |
| MWAS_build_reaction_network | Source code |
| MWAS_filter | Man page Source code |
| MWAS_heatmap | Man page |
| MWAS_network | Man page Source code |
| MWAS_scatterplotMS | Man page Source code |
| MWAS_skylineNMR | Man page Source code |
| MWAS_stats | Man page Source code |
| MWAS_subnetwork_SP | Source code |
| QC_CV | Man page Source code |
| QC_CV_scatterplot | Man page Source code |
| QC_CV_specNMR | Man page Source code |
| QC_PCA | Man page Source code |
| QC_PCA_scoreplot | Man page Source code |
| SK_color | Source code |
| SK_scores | Source code |
| STOCSY_NMR | Man page Source code |
| add_sr_edge | Source code |
| assoc_test | Source code |
| build_cornet_edges | Source code |
| collapse_directionality | Source code |
| compute_score | Source code |
| convertTable | Source code |
| find_index | Source code |
| find_max | Source code |
| find_min | Source code |
| find_score | Source code |
| get_mean | Source code |
| get_metabonetR | Source code |
| get_pval | Source code |
| link_cpd_name | Source code |
| link_sp_reaction | Source code |
| match_igAttribute | Source code |
| metabo_SE | Man page |
| model_bootstrap | Source code |
| new_sp_edge | Source code |
| new_sr_edge | Source code |
| path_as_network | Source code |
| pathway_cpd_table | Source code |
| plot_spectraNMR | Man page Source code |
| reformat_network | Source code |
| remove_isolatedV | Source code |
| roundUp | Source code |
| set_new_limits | Source code |
| sig_color | Source code |
| source_metabolite_SP | Source code |
| sr_network_from_path | Source code |
| targetMetabo_SE | Man page |
| target_metabolite_SP | Source code |
