mnodeSim: Similarity between node lists
In MeSHSim: MeSH(Medical Subject Headings) Semantic Similarity Measures

Description Usage Arguments Details Value Examples

View source: R/node.R

Calculate similarity matrix between two MeSH node lists.

1	mnodeSim(nodeList1, nodeList2, method="SP", frame="node", env=NULL)

`nodeList1, nodeList2`	two nodes or two lists of nodes
`method`	similarity measurment method, see Details for available methods.
`frame`	available options are node and heading, decide whether using node-based or heading-based methods.
`env`	the dataset to use.

Available methods: SP: Shortest Path method, WL: Weighted Link method, WP: Wu and Palmer's method, LC: Leacock and Chodorow's method, Li: Li's method, Lord: Lord's method, Resnik: Resnik's method, Lin: Lin's method, JC: Jiang and Conrath's method.

Semantic similarity matrix between two MeSH node lists.

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    nodeList1<-c("B03.440.400.425.340.590", "B03.440.400.425.117.800.200")
    nodeList2<-c("B03.440.400.425.340.590", "B03.440.400.425.117.800.200", "B03.440.400.425.127.100")
    mnodeSim(nodeList1,nodeList2)