scoreMetaClusters: Summarize meta-cluster information in a table.

In MetaNeighbor: Single cell replicability analysis

Description

Summarize meta-cluster information in a table.

Usage

scoreMetaClusters(meta_clusters, best_hits, outlier_label = "outliers")

Arguments

meta_clusters	Meta-cluster list generated by extractMetaClusters.
best_hits	Matrix of AUROCs used to extract meta-clusters.
outlier_label	Element of meta-cluster list containing outlier clusters.

Value

A data.frame. Column "meta_cluster" contains meta-cluster names, "clusters" lists the clusters belonging to each meta-cluster, "n_studies" is the number of studies spanned by the meta-cluster, "score" is the average similarity between meta-cluster members (average AUROC, NAs are treated as 0).

MetaNeighbor documentation built on Nov. 8, 2020, 5:40 p.m.