Metab: Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.

Metab is an R package for high-throughput processing of metabolomics data analysed by the Automated Mass Spectral Deconvolution and Identification System (AMDIS) (http://chemdata.nist.gov/mass-spc/amdis/downloads/). In addition, it performs statistical hypothesis test (t-test) and analysis of variance (ANOVA). Doing so, Metab considerably speed up the data mining process in metabolomics and produces better quality results. Metab was developed using interactive features, allowing users with lack of R knowledge to appreciate its functionalities.

AuthorRaphael Aggio <ragg005@aucklanduni.ac.nz>
Date of publicationNone
MaintainerRaphael Aggio <ragg005@aucklanduni.ac.nz>
LicenseGPL (>=2)
Version1.8.0

View on Bioconductor

Files

Metab/DESCRIPTION
Metab/NAMESPACE
Metab/R
Metab/R/MetReport.R Metab/R/MetReportNames.R Metab/R/buildLib.R Metab/R/htest.R Metab/R/normalizeByBiomass.R Metab/R/normalizeByInternalStandard.R Metab/R/removeFalsePositives.R
Metab/build
Metab/build/vignette.rds
Metab/data
Metab/data/exampleAMDISReport.rda
Metab/data/exampleBiomass.rda
Metab/data/exampleHtest.rda
Metab/data/exampleIonLib.rda
Metab/data/exampleMSLfile.rda
Metab/data/exampleMetReport.rda
Metab/inst
Metab/inst/CITATION
Metab/inst/NEWS
Metab/inst/doc
Metab/inst/doc/MetabPackage.R
Metab/inst/doc/MetabPackage.Rnw
Metab/inst/doc/MetabPackage.pdf
Metab/inst/extdata
Metab/inst/extdata/130513_REF_SOL2_2_50_50_1.CDF.zip
Metab/inst/scripts
Metab/inst/scripts/makedata.R
Metab/inst/unitTests
Metab/inst/unitTests/test_MetReport.R
Metab/inst/unitTests/test_MetReportNames.R
Metab/inst/unitTests/test_normalizeByBiomass.R
Metab/inst/unitTests/test_normalizeByInternalStandard.R
Metab/inst/unitTests/test_removeFalsePositives.R
Metab/man
Metab/man/MetReport.Rd Metab/man/MetReportNames.Rd Metab/man/Metab-package.Rd Metab/man/buildLib.Rd Metab/man/exampleAMDISReport.Rd Metab/man/exampleBiomass.Rd Metab/man/exampleHtest.Rd Metab/man/exampleIonLib.Rd Metab/man/exampleMSLfile.Rd Metab/man/exampleMetReport.Rd Metab/man/htest.Rd Metab/man/normalizeByBiomass.Rd Metab/man/normalizeByInternalStandard.Rd Metab/man/removeFalsePositives.Rd
Metab/tests
Metab/tests/test-all.R
Metab/vignettes
Metab/vignettes/MetabPackage.Rnw

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