Files in MethReg

Assessing the regulatory potential of DNA methylation regions or sites on gene transcription

NEWS.md README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

data/clinical.rda

data/dna.met.chr21.rda

data/gene.exp.chr21.log2.rda

R/create_triplet_distance_based.R R/get_human_tfs.R R/multiple_testing_correction.R

R/sysdata.rda

R/plot_interaction_model.R R/interaction_model.R R/get_promoter_avg.R R/stratified_model.R R/utils.R R/plot_stratified_model.R R/get_region_target_gene.R R/filter_by_quantile.R R/create_triplet_regulon_based.R R/get_residuals.R R/cor_dnam_target_gene.R R/cor_tf_target_gene.R R/regulons.R R/get_tf_in_region.R R/MethReg.R

vignettes/workflow_methReg.jpg

vignettes/scenarios.png

vignettes/bibliography.bib

vignettes/MethReg.Rmd

vignettes/mapping_target_strategies.png

man/MethReg.Rd man/make_granges_from_names.Rd man/stratified_model.Rd man/get_tf_in_region.Rd man/get_promoter_avg.Rd man/filter_exp_by_quant_mean_FC.Rd man/plot_stratified_model.Rd man/get_human_tfs.Rd man/get_region_target_gene.Rd man/dna.met.chr21.Rd man/cor_tf_target_gene.Rd man/get_residuals.Rd man/filter_dnam_by_quant_diff.Rd man/create_triplet_distance_based.Rd man/plot_interaction_model.Rd man/make_names_from_granges.Rd man/make_exp_se.Rd man/make_dnam_se.Rd man/filter_genes_zero_expression.Rd man/cor_dnam_target_gene.Rd man/interaction_model.Rd man/get_tf_ES.Rd man/create_triplet_regulon_based.Rd man/get_met_probes_info.Rd man/clinical.Rd man/gene.exp.chr21.log2.Rd tests/testthat.R tests/testthat/test-filter_by_quantile.R tests/testthat/test-interaction_model.R tests/testthat/test-cor_dnam_target_gene.R tests/testthat/test-get_promoter_avg.R tests/testthat/test-create_triplet_distance_based.R tests/testthat/test-get_region_target_gene.R tests/testthat/test-get_human_tfs.R tests/testthat/test-stratified_model.R tests/testthat/test-utils.R tests/testthat/test-get_residuals.R tests/testthat/test-get_tf_in_region.R tests/testthat/test-classes.R tests/testthat/test-plot_interaction_model.R tests/testthat/test-plot_stratified_model.R

inst/CITATION

inst/doc/MethReg.Rmd

inst/doc/MethReg.html

inst/doc/MethReg.R

MethReg documentation built on Nov. 8, 2020, 8:01 p.m.