make_exp_se: Transform gene expression matrix into a Summarized Experiment...
In MethReg: Assessing the regulatory potential of DNA methylation regions or sites on gene transcription
Description
Usage
Arguments
Value
Examples
Description
Transform gene expression matrix into a Summarized Experiment object
Usage
1
make_exp_se(exp, genome = c("hg38", "hg19"), verbose = FALSE)
Arguments
exp
Gene expression matrix with gene expression counts,
row as ENSG gene IDS and column as samples
genome
Human genome of reference: hg38 or hg19
verbose
A logical argument indicating if
messages output should be provided.
Value
A summarized Experiment object
Examples
1
2
gene.exp.chr21.log2 <- get(data("gene.exp.chr21.log2"))
gene.exp.chr21.log2.se <- make_exp_se(gene.exp.chr21.log2)
MethReg documentation built on Nov. 8, 2020, 8:01 p.m.
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Description Usage Arguments Value Examples
Description
Transform gene expression matrix into a Summarized Experiment object
Usage
1 | make_exp_se(exp, genome = c("hg38", "hg19"), verbose = FALSE)
|
Arguments
exp |
Gene expression matrix with gene expression counts, row as ENSG gene IDS and column as samples |
genome |
Human genome of reference: hg38 or hg19 |
verbose |
A logical argument indicating if messages output should be provided. |
Value
A summarized Experiment object
Examples
1 2 | gene.exp.chr21.log2 <- get(data("gene.exp.chr21.log2"))
gene.exp.chr21.log2.se <- make_exp_se(gene.exp.chr21.log2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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