MiPP: Misclassification Penalized Posterior Classification

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This package finds optimal sets of genes that seperate samples into two or more classes.

Author
HyungJun Cho <hj4cho@korea.ac.kr>, Sukwoo Kim <s4kim@korea.ac.kr>, Mat Soukup <soukup@fda.gov>, and Jae K. Lee <jaeklee@virginia.edu>
Date of publication
None
Maintainer
Sukwoo Kim <s4kim@korea.ac.kr>
License
GPL (>= 2)
Version
1.46.0
URLs

View on Bioconductor

Man pages

colon
Gene expression data for colon cancer
cv.mipp.rule
Fitting cross-validaion MiPP
get.mipp
Choosing a rule
get.mipp.lda
Fitting LDA to compute MiPP
get.mipp.logistic
Fitting logistic model to compute MiPP
get.mipp.qda
Fitting QDA to compute MiPP
get.mipp.svm.linear
Fitting SVM (linear) to compute MiPP
get.mipp.svm.rbf
Fitting SVM (RBF) to compute MiPP
leuk1
Gene expression data for leukemia
leuk2
Gene expression data for leukemia
leukemia
Gene expression data for leukemia
linearkernel.decision.function
SVM (linear) kernel to compute MiPP
mipp
MiPP-based Classification
mipp.preproc
Preprocessing
mipp.rule
Computing MiPP
mipp.seq
MiPP-based Classification
pre.select
Pre-selection
quant.normal
Quantile normalization
quant.normal2
Quantile normalization
rbfkernel.decision.function
SVM (RBF) kernel to compute MiPP

Files in this package

MiPP/DESCRIPTION
MiPP/NAMESPACE
MiPP/R
MiPP/R/MiPP.R
MiPP/R/MiPP.seq.R
MiPP/R/get.mipp.R
MiPP/R/lda.R
MiPP/R/logistic.R
MiPP/R/pre.select.R
MiPP/R/preprocess.R
MiPP/R/qda.R
MiPP/R/svmlin.R
MiPP/R/svmrbf.R
MiPP/build
MiPP/build/vignette.rds
MiPP/data
MiPP/data/colon.RData
MiPP/data/leukemia.RData
MiPP/inst
MiPP/inst/doc
MiPP/inst/doc/MiPP.Rnw
MiPP/inst/doc/MiPP.pdf
MiPP/man
MiPP/man/colon.Rd
MiPP/man/cv.mipp.rule.Rd
MiPP/man/get.mipp.Rd
MiPP/man/get.mipp.lda.Rd
MiPP/man/get.mipp.logistic.Rd
MiPP/man/get.mipp.qda.Rd
MiPP/man/get.mipp.svm.linear.Rd
MiPP/man/get.mipp.svm.rbf.Rd
MiPP/man/leuk1.Rd
MiPP/man/leuk2.Rd
MiPP/man/leukemia.Rd
MiPP/man/linearkernel.decision.function.Rd
MiPP/man/mipp.Rd
MiPP/man/mipp.preproc.Rd
MiPP/man/mipp.rule.Rd
MiPP/man/mipp.seq.Rd
MiPP/man/pre.select.Rd
MiPP/man/quant.normal.Rd
MiPP/man/quant.normal2.Rd
MiPP/man/rbfkernel.decision.function.Rd
MiPP/vignettes
MiPP/vignettes/MiPP.Rnw