MiPP: Misclassification Penalized Posterior Classification
Version 1.48.0

This package finds optimal sets of genes that seperate samples into two or more classes.

AuthorHyungJun Cho <hj4cho@korea.ac.kr>, Sukwoo Kim <s4kim@korea.ac.kr>, Mat Soukup <soukup@fda.gov>, and Jae K. Lee <jaeklee@virginia.edu>
Bioconductor views Classification Microarray
Date of publicationNone
MaintainerSukwoo Kim <s4kim@korea.ac.kr>
LicenseGPL (>= 2)
Version1.48.0
URL http://www.healthsystem.virginia.edu/internet/hes/biostat/bioinformatics/
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MiPP")

Popular man pages

colon: Gene expression data for colon cancer
cv.mipp.rule: Fitting cross-validaion MiPP
get.mipp.logistic: Fitting logistic model to compute MiPP
get.mipp.qda: Fitting QDA to compute MiPP
get.mipp.svm.rbf: Fitting SVM (RBF) to compute MiPP
leuk2: Gene expression data for leukemia
leukemia: Gene expression data for leukemia
See all...

All man pages Function index File listing

Man pages

colon: Gene expression data for colon cancer
cv.mipp.rule: Fitting cross-validaion MiPP
get.mipp: Choosing a rule
get.mipp.lda: Fitting LDA to compute MiPP
get.mipp.logistic: Fitting logistic model to compute MiPP
get.mipp.qda: Fitting QDA to compute MiPP
get.mipp.svm.linear: Fitting SVM (linear) to compute MiPP
get.mipp.svm.rbf: Fitting SVM (RBF) to compute MiPP
leuk1: Gene expression data for leukemia
leuk2: Gene expression data for leukemia
leukemia: Gene expression data for leukemia
linearkernel.decision.function: SVM (linear) kernel to compute MiPP
mipp: MiPP-based Classification
mipp.preproc: Preprocessing
mipp.rule: Computing MiPP
mipp.seq: MiPP-based Classification
pre.select: Pre-selection
quant.normal: Quantile normalization
quant.normal2: Quantile normalization
rbfkernel.decision.function: SVM (RBF) kernel to compute MiPP

Functions

Files

DESCRIPTION
NAMESPACE
R
R/MiPP.R
R/MiPP.seq.R
R/get.mipp.R
R/lda.R
R/logistic.R
R/pre.select.R
R/preprocess.R
R/qda.R
R/svmlin.R
R/svmrbf.R
build
build/vignette.rds
data
data/colon.RData
data/leukemia.RData
inst
inst/doc
inst/doc/MiPP.Rnw
inst/doc/MiPP.pdf
man
man/colon.Rd
man/cv.mipp.rule.Rd
man/get.mipp.Rd
man/get.mipp.lda.Rd
man/get.mipp.logistic.Rd
man/get.mipp.qda.Rd
man/get.mipp.svm.linear.Rd
man/get.mipp.svm.rbf.Rd
man/leuk1.Rd
man/leuk2.Rd
man/leukemia.Rd
man/linearkernel.decision.function.Rd
man/mipp.Rd
man/mipp.preproc.Rd
man/mipp.rule.Rd
man/mipp.seq.Rd
man/pre.select.Rd
man/quant.normal.Rd
man/quant.normal2.Rd
man/rbfkernel.decision.function.Rd
vignettes
vignettes/MiPP.Rnw
MiPP documentation built on May 20, 2017, 10:06 p.m.

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