LPA: LPA
In MoonlightR: Identify oncogenes and tumor suppressor genes from omics data
Description
Usage
Arguments
Value
Examples
Description
This function carries out the literature phenotype analysis (LPA)
Usage
1
LPA(dataDEGs, BP, BPlist)
Arguments
dataDEGs
is output from DEA
BP
is biological process
BPlist
is list of genes annotated in BP
Value
table with number of pubmed that affects, increase or decrase genes annotated in BP
Examples
1
2
3
data(DEGsmatrix)
BPselected <- c("apoptosis")
BPannotations <- DiseaseList[[match(BPselected, names(DiseaseList))]]$ID
MoonlightR documentation built on Nov. 8, 2020, 8:25 p.m.
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Description Usage Arguments Value Examples
Description
This function carries out the literature phenotype analysis (LPA)
Usage
1 | LPA(dataDEGs, BP, BPlist)
|
Arguments
dataDEGs |
is output from DEA |
BP |
is biological process |
BPlist |
is list of genes annotated in BP |
Value
table with number of pubmed that affects, increase or decrase genes annotated in BP
Examples
1 2 3 | data(DEGsmatrix)
BPselected <- c("apoptosis")
BPannotations <- DiseaseList[[match(BPselected, names(DiseaseList))]]$ID
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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