Files in MotifDb

An Annotated Collection of Protein-DNA Binding Sequence Motifs

build.makefile

NEWS

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

R/MotifList-class.R R/zzz.R misc/hocomoco-v11/importV10.R misc/hocomoco-v11/importV11.R

vignettes/programmersGuide.txt

vignettes/MotifDb.Rmd

vignettes/GSM749704-CTCF-chipVsFimo.png

vignettes/makefile

man/associateTranscriptionFactors.Rd man/MotifList-class.Rd man/subset.Rd man/query.Rd man/export.Rd man/MotifDb.Rd man/geneToMotif.Rd man/motifToGene.Rd tests/runTests.R inst/vanillaTest.R

inst/makefile

inst/doc/MotifDb.html

inst/doc/MotifDb.Rmd inst/doc/MotifDb.R

inst/extdata/hocomoco10.RData

inst/extdata/hPDI.RData

inst/extdata/flyFactorSurvey.RData

inst/extdata/cisbp.RData

inst/extdata/homer.RData

inst/extdata/jaspar2018.RData

inst/extdata/jolma2013.RData

inst/extdata/SwissRegulon.RData

inst/extdata/ScerTF.RData

inst/extdata/hocomoco11.RData

inst/extdata/tfClass.tsv

inst/extdata/uniprobe.RData

inst/extdata/jaspar2016.RData

inst/extdata/jaspar2014.RData

inst/extdata/jaspar.RData

inst/extdata/stamlab.RData

inst/scripts/import/importAll.R

inst/scripts/import/fbgns.RData

inst/scripts/import/README

inst/scripts/import/homer/import.R inst/scripts/import/jaspar2018/fetchMetaData.R

inst/scripts/import/jaspar2018/metaData.Rdata

inst/scripts/import/jaspar2018/import.R

inst/scripts/import/jaspar2018/JASPAR2018_CORE_redundant_pfms_jaspar.txt

inst/scripts/import/uniprobe/test.R inst/scripts/import/uniprobe/import.R inst/scripts/import/jaspar2016/import.R inst/scripts/import/SwissRegulon/import.R inst/scripts/import/stamlab/test.R inst/scripts/import/stamlab/import.R inst/scripts/import/demo/import.R

inst/scripts/import/demo/sample.pcm

inst/scripts/import/demo/md-raw.tsv

inst/scripts/import/jaspar/test.R inst/scripts/import/jaspar/import.R inst/scripts/import/jaspar2014/test.R inst/scripts/import/jaspar2014/import.R inst/scripts/import/flyFactorSurvey/test.R inst/scripts/import/flyFactorSurvey/import.R inst/scripts/import/jolma2013/test.R inst/scripts/import/jolma2013/import.R inst/scripts/import/cisbp/test.R inst/scripts/import/cisbp/import.R inst/scripts/import/hPDI/test.R inst/scripts/import/hPDI/import.R inst/scripts/import/ScerTF/test.R inst/scripts/import/ScerTF/import.R inst/scripts/import/HOCOMOCO/test.R inst/scripts/import/HOCOMOCO/import.R inst/scripts/import/HOCOMOCO/import_functional_only_matrices.R

inst/scripts/import/HOCOMOCO/test.txt

inst/scripts/import/hocomoco10/import.R inst/unitTests/test_MotifDb.R

inst/unitTests/mouse.txt

inst/unitTests/single_matrices/cisbp_matrix.Rdata

inst/unitTests/single_matrices/uniprobe_matrix.Rdata

notInstalled/hidden/tbl.md.Rd

notInstalled/hidden/matrices.Rd

notInstalled/hidden/flyFactorSurvey.Rd

notInstalled/hidden/MotifList.Rd-hidden

notInstalled/hidden/hPDI.Rd

notInstalled/hidden/jaspar.Rd

notInstalled/hidden/MotifDb-package.Rd

notInstalled/hidden/uniprobe.Rd

notInstalled/hidden/ScerTF.Rd

MotifDb documentation built on Nov. 8, 2020, 6:28 p.m.