NOISeq: Exploratory analysis and differential expression for RNA-seq data

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("NOISeq")
AuthorSonia Tarazona, Pedro Furio-Tari, Maria Jose Nueda, Alberto Ferrer and Ana Conesa
Bioconductor views DifferentialExpression RNASeq Sequencing Visualization
Date of publicationNone
MaintainerSonia Tarazona <starazona@cipf.es>
LicenseArtistic-2.0
Version2.20.0

View on Bioconductor

Functions

addData Man page
arsynseq Man page
ARSyNseq Man page
Biodetection Man page
Biodetection-class Man page
CD Man page
CD-class Man page
CountsBio Man page
CountsBio-class Man page
dat Man page
dat2save Man page
dat2save,Biodetection-method Man page
dat2save,CD-method Man page
dat2save,CountsBio-method Man page
dat2save,GCbias-method Man page
dat2save,lengthbias-method Man page
dat2save,PCA-method Man page
dat2save,Saturation-method Man page
degenes Man page
DE.plot Man page
explo.plot Man page
explo.plot,Biodetection-method Man page
explo.plot,CD-method Man page
explo.plot,CountsBio-method Man page
explo.plot,GCbias-method Man page
explo.plot,lengthbias-method Man page
explo.plot,PCA-method Man page
explo.plot,Saturation-method Man page
filtered.data Man page
GCbias Man page
GCbias-class Man page
lengthbias Man page
lengthbias-class Man page
mybiotypes Man page
mychroms Man page
mycounts Man page
myCounts Man page
myCounts-class Man page
mydata Man page
myfactors Man page
mygc Man page
mylength Man page
mynoiseq Man page
noiseq Man page
noiseqbio Man page
Output Man page
Output-class Man page
PCA Man page
PCA-class Man page
PCA.GENES Man page
QCreport Man page
readData Man page
rpkm Man page
saturation Man page
Saturation Man page
Saturation-class Man page
show,Biodetection-method Man page
show,CD-method Man page
show,CountsBio-method Man page
show,GCbias-method Man page
show,lengthbias-method Man page
show,Output-method Man page
show,PCA-method Man page
show,Saturation-method Man page
tmm Man page
uqua Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.