Files in NOISeq
Exploratory analysis and differential expression for RNA-seq data
.Rinstignore
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/myCounts.RData
data/Marioni.RData
data/noiseq.RData
R/ARSyNmodel.R
R/auxiliar.R
R/DE.plot.R
R/noiseq.R
R/degenes.R
R/ASCAfun1.R
R/GC.bias.plot.R
R/ASCA1f.R
R/ASCAfun2.R
R/PCA.plot.R
R/ASCA2f.R
R/QCreport.R
R/probdeg.R
R/MD.plot.R
R/saturation.plot.R
R/fewreplicates.R
R/ASCAfunres.R
R/classes.R
R/allMD.R
R/noiseqbio.R
R/filter.low.counts.R
R/readData.R
R/cd.plot.R
R/countsbio.plot.R
R/PCA.GENES.R
R/ASCA3f.R
R/ARSyNcomponents.R
R/ASCAfun12.R
R/dat.R
R/makeASCAdesign.R
R/normalization.R
R/length.bias.plot.R
R/biodetection.plot.R
R/ARSyNseq.R
R/MD.R
R/ASCAfun-triple.R
vignettes/NOISeq.Rnw
man/Marioni.Rd
man/degenes.Rd
man/readData.Rd
man/Output.Rd
man/dat.Rd
man/example.Rd
man/GCcontentBias.Rd
man/PCA.GENES.Rd
man/QCreport.Rd
man/noiseq.Rd
man/ARSyNSeq.Rd
man/CountsBio.Rd
man/DE.plot.Rd
man/Saturation.Rd
man/normalization.Rd
man/LengthBias.Rd
man/filter.low.counts.Rd
man/PCA.Rd
man/explo.plot.Rd
man/myCounts.Rd
man/dat2save.Rd
man/CD.Rd
man/Biodetection.Rd
man/noiseqbio.Rd
inst/CITATION
inst/doc/NOISeq.pdf
inst/doc/NOISeq.R
inst/doc/NOISeq.Rnw
inst/doc/QCreport.pdf
