NormqPCR: Functions for normalisation of RT-qPCR data
Version 1.22.0

Functions for the selection of optimal reference genes and the normalisation of real-time quantitative PCR data.

AuthorMatthias Kohl, James Perkins, Nor Izayu Abdul Rahman
Bioconductor views GeneExpression MicrotitrePlateAssay qPCR
Date of publicationNone
MaintainerJames Perkins <j.perkins@ucl.ac.uk>
LicenseLGPL-3
Version1.22.0
URL www.bioconductor.org/packages/release/bioc/html/NormqPCR.html
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("NormqPCR")

Getting started

Package overview

Popular man pages

Bladder: Bladder dataset of Andersen et al (2004)
BladderRepro: Dataset of Andersen et al (2004)
ComputeNRQs: Compute Normalized Relative Quantities
deltaCt: Perform normalization with a given housekeeping gene
geNorm: Data set of Vandesompele et al (2002)
selectHKs: Selection of reference/housekeeping genes
stabMeasureM: Gene expression stability value M
See all...

All man pages Function index File listing

Man pages

Bladder: Bladder dataset of Andersen et al (2004)
BladderRepro: Dataset of Andersen et al (2004)
Colon: Colon dataset of Andersen et al (2004)
combineTechReps: Combines Technical Replicates
combineTechRepsSD: Combines Technical Replicates
ComputeNRQs: Compute Normalized Relative Quantities
CqValues: Compute Cq value and amplification efficiency
deltaCt: Perform normalization with a given housekeeping gene
deltaDeltaCt: Perform normalization and differential expression with given...
geNorm: Data set of Vandesompele et al (2002)
geomMean: Geometric Mean
makeAllNAs: Make all Cq values NA
makeAllNewVal: Make all Cq values NA
NormqPCR-package: Functions for normalisation of RT-qPCR data.
replaceAboveCutOff: Replace Cq values with new value
replaceNAs: Replace NAs with a given value
selectHKs: Selection of reference/housekeeping genes
stabMeasureM: Gene expression stability value M
stabMeasureRho: Gene expression stability value rho

Functions

Files

DESCRIPTION
NAMESPACE
R
R/ComputeNRQs.R
R/CqValues.R
R/CtToCqWrappers.R
R/allGenerics.R
R/combineTechReps.R
R/combineTechRepsWithSD.R
R/dealWithNA.R
R/deltaCt.R
R/deltaDeltaCt.R
R/geomMean.R
R/selectHKs.R
R/stabMeasureM.R
R/stabMeasureRho.R
build
build/vignette.rds
data
data/Bladder.RData
data/BladderRepro.RData
data/Colon.RData
data/geNorm.RData
inst
inst/CITATION
inst/doc
inst/doc/NormqPCR.R
inst/doc/NormqPCR.Rnw
inst/doc/NormqPCR.pdf
inst/exData
inst/exData/example.txt
inst/exData/qPCR.techReps.txt
man
man/Bladder.Rd
man/BladderRepro.Rd
man/Colon.Rd
man/ComputeNRQs.Rd
man/CqValues.Rd
man/NormqPCR-package.Rd
man/combineTechReps.Rd
man/combineTechRepsSD.Rd
man/deltaCt.Rd
man/deltaDeltaCt.Rd
man/geNorm.Rd
man/geomMean.Rd
man/makeAllNAs.Rd
man/makeAllNewVal.Rd
man/replaceAboveCutOff.Rd
man/replaceNAs.Rd
man/selectHKs.Rd
man/stabMeasureM.Rd
man/stabMeasureRho.Rd
vignettes
vignettes/NormqPCR.Rnw
NormqPCR documentation built on May 20, 2017, 9:19 p.m.

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