OCplus: Operating characteristics plus sample size and local fdr for microarray experiments

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("OCplus")
AuthorYudi Pawitan <Yudi.Pawitan@ki.se> and Alexander Ploner <Alexander.Ploner@ki.se>
Bioconductor views DifferentialExpression Microarray MultipleComparison
Date of publicationNone
MaintainerAlexander Ploner <Alexander.Ploner@ki.se>
LicenseLGPL
Version1.48.2

View on Bioconductor

Functions

approx2d Man page
average.fdr Man page
brk2mid Man page
CDF Man page
CDFmix Man page
CDFmix.paired Man page
CDF.paired Man page
df2var Man page
dgfree Man page
dmt Man page
dmtmix Man page
dmtmix.paired Man page
dmt.paired Man page
DoConstrain Man page
DrawContourlines Man page
EOC Man page
FDR Man page
fdr1d Man page
fdr2d Man page
FDRp Man page
FDR.paired Man page
gausei Man page
lfdr Man page
lfdr.paired Man page
MAsim Man page
MAsim.real Man page
MAsim.smyth Man page
MAsim.var Man page
MidBreaks Man page
MidBreaks.t Man page
OCshow Man page
p0 Man page
PermNull Man page
plot.fdr1d.result Man page
plot.fdr2d.result Man page
plot.FDR.result Man page
Rinv Man page
rmatrix Man page
samplesize Man page
smooth1d Man page
smooth2d.basic Man page
smooth2d.direct Man page
summary.fdr.result Man page
tMixture Man page
TOC Man page
topDE Man page
Tornadoplot Man page
tstatistics Man page
Volcanoplot Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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