Man pages for OLIN
Optimized local intensity-dependent normalisation of two-color microarrays

anovaintOne-factorial ANOVA assessing intensity-dependent bias
anovapinOne-factorial ANOVA assessing pin-dependent bias.
anovaplateOne-factorial ANOVA assessing pin-dependent bias.
anovaspatialOne-factorial ANOVA assessing spatial bias
backgroundCorrect2Background correction
basBetween-array scaling
colorbar.mxyGenerates a colour bar
colorbar.mxy.absGenerates a colour bar
colorbar.sigGenerates a colour bar for spatial significance plots
fdr.intAssessment of the significance of intensity-dependent bias
fdr.int2Assessment of the significance of intensity-dependent bias
fdr.spatialAssessment of the significance of spatial bias
fdr.spatial2Assessment of the significance of spatial bias
fgbg.visuVisualisation of foreground and background fluorescence spot...
inoIntensity-dependent normalisation of two-colour microarrays
linLocal intensity-dependent normalisation of two-colour...
m2vConverts matrix to vector based on spot layout
ma.matrixCalculation of moving average for a matrix
ma.vectorCalculation of moving average for a vector
mxy2.plotGeneration of MXY plots based on spot coordinates
mxy.abs.plotGeneration of MXY plots of absolute values
mxy.plotGeneration of MXY plots
oinOptimised intensity-dependent normalisation of two-colour...
olinOptimised local intensity-dependent normalisation of...
p.intCalculates significance of intensity-dependent bias
p.int2Calculates significance of intensity-dependent bias
p.spatialAssessment of the significance of spatial bias based on...
p.spatial2Assessment of the significance of spatial bias based on...
sigint.plotVisualisation of significance of intensity-dependent bias
sigint.plot2Visualisation of significance of intensity-dependent bias
sig.maskMasking of data based on significance testing
sigxy.plotVisualisation of significance tests for spatial bias
sigxy.plot2Visualisation of significance tests for spatial bias
swcDNA microarray data of SW480/SW620 experiment
sw.olinNormalised cDNA microarray data of SW480/SW620 experiment
sw.xySpatial coordinates of spot locations of SW480/SW620...
v2mConverts vector to matrix based on spot layout
OLIN documentation built on May 2, 2018, 3:30 a.m.