| anovaint | One-factorial ANOVA assessing intensity-dependent bias |
| anovapin | One-factorial ANOVA assessing pin-dependent bias. |
| anovaplate | One-factorial ANOVA assessing pin-dependent bias. |
| anovaspatial | One-factorial ANOVA assessing spatial bias |
| backgroundCorrect2 | Background correction |
| bas | Between-array scaling |
| colorbar.mxy | Generates a colour bar |
| colorbar.mxy.abs | Generates a colour bar |
| colorbar.sig | Generates a colour bar for spatial significance plots |
| fdr.int | Assessment of the significance of intensity-dependent bias |
| fdr.int2 | Assessment of the significance of intensity-dependent bias |
| fdr.spatial | Assessment of the significance of spatial bias |
| fdr.spatial2 | Assessment of the significance of spatial bias |
| fgbg.visu | Visualisation of foreground and background fluorescence spot... |
| ino | Intensity-dependent normalisation of two-colour microarrays |
| lin | Local intensity-dependent normalisation of two-colour... |
| m2v | Converts matrix to vector based on spot layout |
| ma.matrix | Calculation of moving average for a matrix |
| ma.vector | Calculation of moving average for a vector |
| mxy2.plot | Generation of MXY plots based on spot coordinates |
| mxy.abs.plot | Generation of MXY plots of absolute values |
| mxy.plot | Generation of MXY plots |
| oin | Optimised intensity-dependent normalisation of two-colour... |
| olin | Optimised local intensity-dependent normalisation of... |
| p.int | Calculates significance of intensity-dependent bias |
| p.int2 | Calculates significance of intensity-dependent bias |
| p.spatial | Assessment of the significance of spatial bias based on... |
| p.spatial2 | Assessment of the significance of spatial bias based on... |
| sigint.plot | Visualisation of significance of intensity-dependent bias |
| sigint.plot2 | Visualisation of significance of intensity-dependent bias |
| sig.mask | Masking of data based on significance testing |
| sigxy.plot | Visualisation of significance tests for spatial bias |
| sigxy.plot2 | Visualisation of significance tests for spatial bias |
| sw | cDNA microarray data of SW480/SW620 experiment |
| sw.olin | Normalised cDNA microarray data of SW480/SW620 experiment |
| sw.xy | Spatial coordinates of spot locations of SW480/SW620... |
| v2m | Converts vector to matrix based on spot layout |
