extract_assay: Data extraction from "MultiAssayExperiment" object

In OMICsPCA: An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples

Description

Extraction of individuals according to user supplied group and Assay

Usage

extract_assay(name, Assay, groups, groupinfo = NULL,
addgroupnames = TRUE)

Arguments

name	name of the "OMICs" object from which data is to be retrieved.
Assay	name of the "Assay" from which data is to be retrieved.
groups	name of the "groups" from which data is to be retrieved.
groupinfo	output of create_group() or similar object
addgroupnames	logical argument. If "TRUE", adds the group membership info of returned individuals

Value

a data frame containing the intended information

Author(s)

Subhadeep Das

Examples

x <- extract_assay(name = multi_assay, Assay = "H2az",
groups = c("WE","RE"), groupinfo = groupinfo_ext)

x

OMICsPCA documentation built on Nov. 8, 2020, 5:01 p.m.