BeadPlate-class: Class '"BeadPlate"'

In OSAT: OSAT: Optimal Sample Assignment Tool

Description

A class represent a plate consistent of multiple chips. Inherite from class gPlate.

Objects from the Class

Objects can be created by calls of the form new("BeadPlate", chip, nRows, nColumns, comment, ...).

Slots

chip:

Object of class "gSlide". The slide used in the plate.

nRows:

Object of class "integer". Number of clide per row.

nColumns:

Object of class "integer". Number of slide per column.

layout:

Object of class "data.frame". A data frame represent the layout of the plate.

byrow:

Object of class "logical". Order of slide on the plate.

metadata:

Object of class "list".A brief description of the plate.

Predefined plate

IlluminaBeadChip96Plate

IlluminaBeadChip48Plate

IlluminaBeadChip24Plate

are plates that hold 2, 4, 8 IlluminaBeadChip chips and have 24, 48, 96 wells, respectively.

Extends

Class "gPlate", directly. Class "gArray", by class "gPlate", distance 2.

Examples

library("OSAT")
newPlate <- new("BeadPlate", chip=IlluminaBeadChip, nRows=2L, nColumns=4L,  comment="mock plate")
newPlate

OSAT documentation built on Nov. 8, 2020, 5:48 p.m.