OmicCircos: High-quality circular visualization of omics data

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OmicCircos is an R application and package for generating high-quality circular plots for omics data.

Author
Ying Hu <yhu@mail.nih.gov> Chunhua Yan <yanch@mail.nih.gov>
Date of publication
None
Maintainer
Ying Hu <yhu@mail.nih.gov>
License
GPL-2
Version
1.12.0

View on Bioconductor

Man pages

circos
draw circular
OmicCircos
OmicCircos package
segAnglePo
generate circular skeleton data from user's mapping data
segAnglePo-methods
~~ Methods for Function 'segAnglePo' ~~
sim.circos
circular data simulation
TCGA.BC.cnv.2k.60
copy number data of TCGA Breast Cancer
TCGA.BC.fus
TCGA Breast Cancer gene fusion data.
TCGA.BC.gene.exp.2k.60
TCGA BRCA expression data
TCGA.BC_Her2_cnv_exp
TCGA BRCA expression and cnv association
TCGA.BC.sample60
TCGA BRCA Sample names and subtypes
TCGA.PAM50_genefu_hg18
BRCA PAM50 gene list (hg18)
UCSC.chr.colors
chromosome banding colors
UCSC.hg18
human hg18 circumference coordinates
UCSC.hg18.chr
human hg18 segment data.
UCSC.hg19
human hg19 circumference coordinates
UCSC.hg19.chr
human hg19 segment data
UCSC.mm10
mouse mm10 circumference coordinates
UCSC.mm10.chr
mouse mm10 segment data.
UCSC.mm9
mouse mm9 circumference coordinates
UCSC.mm9.chr
mouse mm9 segment data.

Files in this package

OmicCircos/DESCRIPTION
OmicCircos/NAMESPACE
OmicCircos/R
OmicCircos/R/OmicCircos.R
OmicCircos/build
OmicCircos/build/vignette.rds
OmicCircos/data
OmicCircos/data/TCGA.BC.cnv.2k.60.RData
OmicCircos/data/TCGA.BC.fus.RData
OmicCircos/data/TCGA.BC.gene.exp.2k.60.RData
OmicCircos/data/TCGA.BC.sample60.RData
OmicCircos/data/TCGA.BC_Her2_cnv_exp.RData
OmicCircos/data/TCGA.PAM50_genefu_hg18.RData
OmicCircos/data/UCSC.chr.colors.RData
OmicCircos/data/UCSC.hg18.RData
OmicCircos/data/UCSC.hg18.chr.RData
OmicCircos/data/UCSC.hg19.RData
OmicCircos/data/UCSC.hg19.chr.RData
OmicCircos/data/UCSC.mm10.RData
OmicCircos/data/UCSC.mm10.chr.RData
OmicCircos/data/UCSC.mm9.RData
OmicCircos/data/UCSC.mm9.chr.RData
OmicCircos/demo
OmicCircos/demo/00Index
OmicCircos/demo/OmicCircos4vignette1.R
OmicCircos/demo/OmicCircos4vignette10.R
OmicCircos/demo/OmicCircos4vignette2.R
OmicCircos/demo/OmicCircos4vignette3.R
OmicCircos/demo/OmicCircos4vignette4.R
OmicCircos/demo/OmicCircos4vignette5.R
OmicCircos/demo/OmicCircos4vignette6.R
OmicCircos/demo/OmicCircos4vignette7.R
OmicCircos/demo/OmicCircos4vignette8.R
OmicCircos/demo/OmicCircos4vignette9.R
OmicCircos/inst
OmicCircos/inst/doc
OmicCircos/inst/doc/OmicCircos_vignette.R
OmicCircos/inst/doc/OmicCircos_vignette.Rnw
OmicCircos/inst/doc/OmicCircos_vignette.pdf
OmicCircos/man
OmicCircos/man/OmicCircos.Rd
OmicCircos/man/TCGA.BC.cnv.2k.60.Rd
OmicCircos/man/TCGA.BC.fus.Rd
OmicCircos/man/TCGA.BC.gene.exp.2k.60.Rd
OmicCircos/man/TCGA.BC.sample60.Rd
OmicCircos/man/TCGA.BC_Her2_cnv_exp.Rd
OmicCircos/man/TCGA.PAM50_genefu_hg18.Rd
OmicCircos/man/UCSC.chr.colors.Rd
OmicCircos/man/UCSC.hg18.Rd
OmicCircos/man/UCSC.hg18.chr.Rd
OmicCircos/man/UCSC.hg19.Rd
OmicCircos/man/UCSC.hg19.chr.Rd
OmicCircos/man/UCSC.mm10.Rd
OmicCircos/man/UCSC.mm10.chr.Rd
OmicCircos/man/UCSC.mm9.Rd
OmicCircos/man/UCSC.mm9.chr.Rd
OmicCircos/man/circos.Rd
OmicCircos/man/segAnglePo-methods.Rd
OmicCircos/man/segAnglePo.Rd
OmicCircos/man/sim.circos.Rd
OmicCircos/vignettes
OmicCircos/vignettes/OmicCircos_vignette.Rnw