PGSEA: Parametric Gene Set Enrichment Analysis
Version 1.50.0

Parametric Analysis of Gene Set Enrichment

AuthorKyle Furge <kyle.furge@vai.org> and Karl Dykema <karl.dykema@vai.org>
Bioconductor views Microarray
Date of publicationNone
MaintainerKarl Dykema <karl.dykema@vai.org>
LicenseGPL-2
Version1.50.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("PGSEA")

Popular man pages

aggregateExprs: Aggregate expression data
editSmc: Edit "smc" objects
kegg2smc: KEGG pathway to "smc"
nbEset: Reduced Neuroblastoma data set
PGSEA: Parametric Gene Set Enrichment Analysis
VAIgsc: Molecular Concepts (Gene Sets) prepared at VAI
VAImcs: Molecular Concepts prepared at VAI
See all...

All man pages Function index File listing

Man pages

aggregateExprs: Aggregate expression data
convertSmc: Convert Entrez ID based "smc" object
editSmc: Edit "smc" objects
go2smc: Gene Ontology 2 "smc"
GOLUBmcs: Molecular Concepts prepared at VAI from data created by Golub...
kegg2smc: KEGG pathway to "smc"
nbEset: Reduced Neuroblastoma data set
PGSEA: Parametric Gene Set Enrichment Analysis
readGmt: readGmt
readSmc: Read SMC files
scanSmc: Scan through smc objects
smcPlot: Plot PGSEA results
VAIgsc: Molecular Concepts (Gene Sets) prepared at VAI
VAImcs: Molecular Concepts prepared at VAI
writeGmt: writeGmt
writeSmc: writeSmc

Functions

GOLUBmcs Man page
PGSEA Man page Source code
VAIgsc Man page
VAImcs Man page
aggregateExprs Man page Source code
convertSmc Man page Source code
editSmc Man page Source code
go2smc Man page Source code
kegg2smc Man page Source code
nbEset Man page
readGmt Man page Source code
readSmc Man page Source code
scanSmc Man page Source code
smc-class Man page
smcPlot Man page Source code
writeGmt Man page Source code
writeSmc Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/PGSEA.R
build
build/vignette.rds
data
data/GOLUBmcs.rda
data/VAIgsc.rda
data/VAImcs.rda
data/nbEset.rda
inst
inst/doc
inst/doc/PGSEA.R
inst/doc/PGSEA.Rnw
inst/doc/PGSEA.pdf
inst/doc/PGSEA2.R
inst/doc/PGSEA2.Rnw
inst/doc/PGSEA2.pdf
inst/extdata
inst/extdata/sample.gmt
man
man/GOLUBmcs.Rd
man/PGSEA.Rd
man/VAIgsc.Rd
man/VAImcs.Rd
man/aggregateExprs.Rd
man/convertSmc.Rd
man/editSmc.Rd
man/go2smc.Rd
man/kegg2smc.Rd
man/nbEset.Rd
man/readGmt.Rd
man/readSmc.Rd
man/scanSmc.Rd
man/smcPlot.Rd
man/writeGmt.Rd
man/writeSmc.Rd
vignettes
vignettes/PGSEA.Rnw
vignettes/PGSEA2.Rnw
PGSEA documentation built on May 20, 2017, 10:37 p.m.

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