Protemics Standard Initiative Common QUery InterfaCe

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Description

This package provides a simple functional interface to the rich resources of the PSICQUIC, the HUPO Proteomics Standard Initiative (HUPO-PSI) project to offer programmatic access to molecular interaction databases.

http://code.google.com/p/psicquic/

There are two classes in the package: PSICQUIC provides the query interface via the interactions method, whose results are returned in a data.frame; and IDMapper adds gene symbol and entrez geneIDs to the PSICQUIC results data.frame, for easier interpretation and subsequent use.

Author(s)

Paul Shannon<pshannon@fhcrc.org>

References

http://code.google.com/p/psicquic/ Aranda, Bruno, et al. "PSICQUIC and PSISCORE: accessing and scoring molecular interactions." Nature methods 8.7 (2011): 528-529.

See Also

providers, interactions, rawQuery, addGeneInfo, IDMapper, interactionTypes, detectionMethods, speciesIDs