This package provides a simple functional interface to the rich resources of the PSICQUIC, the HUPO Proteomics Standard Initiative (HUPO-PSI) project to offer programmatic access to molecular interaction databases.
There are two classes in the package:
provides the query
interface via the interactions method, whose results are
returned in a data.frame; and
adds gene symbol and entrez geneIDs to the PSICQUIC results data.frame,
for easier interpretation and subsequent use.
http://code.google.com/p/psicquic/ Aranda, Bruno, et al. "PSICQUIC and PSISCORE: accessing and scoring molecular interactions." Nature methods 8.7 (2011): 528-529.
providers, interactions, rawQuery, addGeneInfo, IDMapper, interactionTypes, detectionMethods, speciesIDs