PSICQUIC: Proteomics Standard Initiative Common QUery InterfaCe
Version 1.14.0

PSICQUIC is a project within the HUPO Proteomics Standard Initiative (HUPO-PSI). It standardises programmatic access to molecular interaction databases.

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AuthorPaul Shannon
Bioconductor views DataImport GraphAndNetwork ThirdPartyClient
Date of publicationNone
MaintainerPaul Shannon<pshannon@systemsbiology.org>
LicenseApache License 2.0
Version1.14.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("PSICQUIC")

Man pages

IDMapper-class: IDMapper
interactions: interactions
providers: providers
PSICQUIC-class: PSICQUIC
PSICQUIC-package: Protemics Standard Initiative Common QUery InterfaCe
rawQuery: rawQuery
webBrowser-functions: Web Browser Functions

Functions

IDMapper Man page Source code
IDMapper-class Man page
PSICQUIC Man page Source code
PSICQUIC-class Man page
PSICQUIC-package Man page
\S4method{addGeneInfo}{IDMapper} Man page
\S4method{addStandardNames}{IDMapper} Man page
\S4method{interactions}{PSICQUIC} Man page
\S4method{providers}{PSICQUIC} Man page
\S4method{rawQuery}{PSICQUIC} Man page
addGeneInfo Man page
addGeneInfo,IDMapper-method Man page
addStandardNames Man page
addStandardNames,IDMapper-method Man page
categorize Source code
class:IDMapper Man page
class:PSICQUIC Man page
detectionMethods Man page Source code
enumerateSearchPairs Source code
interactionTypes Man page Source code
interactions Man page
interactions,PSICQUIC-method Man page
loadRegistry Source code
printf Source code
providers Man page
providers,PSICQUIC-method Man page
rawQuery Man page
rawQuery,PSICQUIC-method Man page
restrictBySpecies Source code
retrieveData Source code
runQuery Source code
show,PSICQUIC-method Man page
speciesIDs Man page Source code
translate.ensemblGene Source code
translate.ensemblProt Source code
translate.geneSymbol Source code
translate.locuslink Source code
translate.refseq Source code
translate.string Source code
translate.uniprotkb Source code
translateAll Source code

Files

DESCRIPTION
NAMESPACE
R
R/IDMapper-class.R
R/PSICQUIC-class.R
build
build/vignette.rds
inst
inst/doc
inst/doc/PSICQUIC.R
inst/doc/PSICQUIC.Rnw
inst/doc/PSICQUIC.pdf
inst/extdata
inst/extdata/mycInteractions.RData
inst/unitTests
inst/unitTests/TODO
inst/unitTests/test_IDMapper.R
inst/unitTests/test_PSICQUIC.R
man
man/IDMapper-class.Rd
man/PSICQUIC-class.Rd
man/PSICQUIC-package.Rd
man/interactions.Rd
man/providers.Rd
man/rawQuery.Rd
man/webBrowser-functions.Rd
tests
tests/runTests.R
vignettes
vignettes/PSICQUIC.Rnw
PSICQUIC documentation built on May 20, 2017, 10:35 p.m.