PanVizGenerator: Generate PanViz visualisations from your pangenome

PanViz is a JavaScript based visualisation tool for functionaly annotated pangenomes. PanVizGenerator is a companion for PanViz that facilitates the necessary data preprocessing step necessary to create a working PanViz visualization. The output is fully self-contained so the recipient of the visualization does not need R or PanVizGenerator installed.

Author
Thomas Lin Pedersen
Date of publication
None
Maintainer
Thomas Lin Pedersen <thomasp85@gmail.com>
License
GPL (>= 2)
Version
1.2.0
URLs

View on Bioconductor

Man pages

getGO
Download and store the Gene Ontology
panviz
Convert pangenome into PanViz
PanVizGenerator
Launch the PanVizGenerator shiny app

Files in this package

PanVizGenerator/.travis.yml
PanVizGenerator/DESCRIPTION
PanVizGenerator/NAMESPACE
PanVizGenerator/NEWS
PanVizGenerator/R
PanVizGenerator/R/GO.R
PanVizGenerator/R/IO.R
PanVizGenerator/R/aaa.R
PanVizGenerator/R/panviz.R
PanVizGenerator/R/shinyStuff.R
PanVizGenerator/R/zzz.R
PanVizGenerator/README.md
PanVizGenerator/build
PanVizGenerator/build/vignette.rds
PanVizGenerator/inst
PanVizGenerator/inst/PanViz
PanVizGenerator/inst/PanViz/PanViz.html
PanVizGenerator/inst/PanViz/README
PanVizGenerator/inst/PanViz/script.js
PanVizGenerator/inst/PanViz/style.css
PanVizGenerator/inst/doc
PanVizGenerator/inst/doc/panviz_howto.R
PanVizGenerator/inst/doc/panviz_howto.Rmd
PanVizGenerator/inst/doc/panviz_howto.html
PanVizGenerator/inst/extdata
PanVizGenerator/inst/extdata/exampleData.csv
PanVizGenerator/inst/server.R
PanVizGenerator/inst/shinyapps
PanVizGenerator/inst/shinyapps/thomas
PanVizGenerator/inst/www
PanVizGenerator/inst/www/code
PanVizGenerator/inst/www/code/scripts.js
PanVizGenerator/inst/www/index.html
PanVizGenerator/inst/www/media
PanVizGenerator/inst/www/media/GitHubLogo.svg
PanVizGenerator/inst/www/media/PanVizLogo1.svg
PanVizGenerator/inst/www/media/PanVizLogo2.svg
PanVizGenerator/inst/www/media/bugs.svg
PanVizGenerator/inst/www/media/goNav1.png
PanVizGenerator/inst/www/media/goNav2.png
PanVizGenerator/inst/www/media/goNav3.png
PanVizGenerator/inst/www/media/panvizDyn1.png
PanVizGenerator/inst/www/media/panvizDyn2.png
PanVizGenerator/inst/www/media/panvizDyn3.png
PanVizGenerator/inst/www/media/share.svg
PanVizGenerator/inst/www/media/strainCom1.png
PanVizGenerator/inst/www/media/strainCom2.png
PanVizGenerator/inst/www/media/visQuery1.png
PanVizGenerator/inst/www/media/visQuery2.png
PanVizGenerator/inst/www/media/visQuery3.png
PanVizGenerator/inst/www/media/visQuery4.png
PanVizGenerator/inst/www/style
PanVizGenerator/inst/www/style/styles.css
PanVizGenerator/man
PanVizGenerator/man/PanVizGenerator.Rd
PanVizGenerator/man/getGO.Rd
PanVizGenerator/man/panviz.Rd
PanVizGenerator/tests
PanVizGenerator/tests/testthat
PanVizGenerator/tests/testthat.R
PanVizGenerator/tests/testthat/test-GO.R
PanVizGenerator/tests/testthat/test-io.R
PanVizGenerator/tests/testthat/test-panviz.R
PanVizGenerator/vignettes
PanVizGenerator/vignettes/panviz_howto.Rmd
PanVizGenerator/vignettes/panvizgenerator.png