API for Pbase
Manipulating and exploring protein and proteomics data
| Global functions | |
|---|---|
| .addColumn | Source code |
| .addFastaInformation2mcol | Source code |
| .addIdentificationDataProteins | Source code |
| .addOverhangs | Source code |
| .addPeptideFragmentsProteins | Source code |
| .calculateIsoelectricPoint | Source code |
| .calculateMolecularWeight | Source code |
| .checkPcol | Source code |
| .createPbaseAccessionNumbers | Source code |
| .emptyProtDomIRanges | Source code |
| .fastaCommentParser | Source code |
| .fastaComments2DataFrame | Source code |
| .flatIRangesList | Source code |
| .get.amino.acids | Source code |
| .get.atomic.mass | Source code |
| .get_pranges_indices | Source code |
| .isInRange | Source code |
| .isPbaseAccessionNumber | Source code |
| .isUniProtAccessionNumber | Source code |
| .isValidAccessionNumber | Source code |
| .isValidPeptide | Source code |
| .onAttach | Source code |
| .peptidePosition | Source code |
| .perlRxSubstring | Source code |
| .pfilterProteins | Source code |
| .plotProteins | Source code |
| .readAAStringSet | Source code |
| .setNames2 | Source code |
| .singleAA | Source code |
| .singular | Source code |
| .toBeImplemented | Source code |
| .validProteins | Source code |
| Pparams | Man page Source code |
| Pparams-class | Man page |
| Proteins | Man page |
| Proteins,EnsDb,missing-method | Man page |
| Proteins,character,missing-method | Man page |
| Proteins,missing,character-method | Man page |
| Proteins,missing,missing-method | Man page |
| Proteins-class | Man page |
| [,Proteins,ANY,ANY,ANY-method | Man page |
| [,Proteins,ANY,ANY-method | Man page |
| [[,Proteins,ANY,ANY-method | Man page |
| aa | Man page Source code |
| aa,Proteins-method | Man page |
| aaranges | Source code |
| acols | Man page Source code |
| addIdentificationData,Proteins,character-method | Man page |
| addPeptideFragments | Man page |
| addPeptideFragments,Proteins,character-method | Man page |
| addacol | Source code |
| avarLabels | Man page Source code |
| avarLabels,Proteins-method | Man page |
| biotypes | Source code |
| calculateHeavyLabels | Man page Source code |
| class:Proteins | Man page |
| cleave,Proteins-method | Man page |
| etrid2grl | Man page Source code |
| htcat | Source code |
| isCleaved | Man page Source code |
| isForward | Man page Source code |
| isReverse | Man page Source code |
| length,Proteins-method | Man page |
| mapplot | Source code |
| metadata,Proteins-method | Man page |
| metadata<-,Proteins-method | Man page |
| names,Proteins-method | Man page |
| p | Man page |
| pcols | Man page Source code |
| pfeatures | Man page Source code |
| pfeatures,Proteins-method | Man page |
| pfilter | Man page |
| pfilter,Proteins-method | Man page |
| plot,Proteins,missing-method | Man page |
| plotAsAnnotationTrack | Man page Source code |
| plotAsGeneRegionTrack | Man page Source code |
| plotRanges | Source code |
| pms | Man page |
| pplot | Source code |
| pranges | Man page Source code |
| pranges,Proteins-method | Man page |
| pranges<- | Man page |
| pranges<-,Proteins,CompressedIRangesList-method | Man page |
| proteinCoding | Man page |
| proteinCoding,GRanges-method | Man page |
| proteinCoding,GRangesList-method | Man page |
| proteinCoding-methods | Man page |
| proteinCoverage | Man page Source code |
| proteotypic | Man page Source code |
| pvarLabels | Man page Source code |
| pvarLabels,Proteins-method | Man page |
| replaceAcols | Source code |
| replacePranges | Source code |
| rmEmptyRanges | Man page Source code |
| seqnames,Proteins-method | Man page |
| show,Pparams-method | Man page |
| show,Proteins-method | Man page |
