Files in Pbase
Manipulating and exploring protein and proteomics data

DESCRIPTION
NAMESPACE
NEWS
R
R/AAStringSet-functions.R R/AllClasses.R R/AllGenerics.R R/GRanges.R R/Proteins-functions.R R/Proteins-methods.R R/coordinate-mapping-methods.R R/environments.R R/fasta-functions.R R/heavylabels-functions.R R/onAttach.R R/params.R R/peptides-functions.R R/plotting.R R/updateObject.R R/utils.R R/vigfigs.R
build
build/vignette.rds
data
data/datalist
data/p.rda
data/pms.rda
inst
inst/doc
inst/doc/Pbase-data.R inst/doc/Pbase-data.Rmd
inst/doc/Pbase-data.html
inst/extdata
inst/extdata/01_test_database.fasta
inst/extdata/04_test_database.fasta
inst/extdata/HUMAN_2015_02_selected.fasta
inst/extdata/Thermo_Hela_PRTC_selected.mgf.gz
inst/extdata/Thermo_Hela_PRTC_selected.mzid
inst/extdata/heavylabels_groundtruth.csv
inst/extdata/heavylabels_proteins_of_interest.fasta
inst/scripts
inst/scripts/makep.R
inst/vignettes
inst/vignettes/Pbase-with-ensembldb.Rmd inst/vignettes/ensucsc.Rmd inst/vignettes/mapping.Rmd
man
man/Pparams-class.Rd man/Proteins-class.Rd man/calculateHeavyLabels.Rd man/coordinate-mapping-methods.Rd man/etrid2grl.Rd man/isReverse.Rd man/p.Rd man/plotAsAnnotationTrack.Rd man/proteinCoding-methods.Rd
tests
tests/testthat
tests/testthat.R tests/testthat/test_AAStringSet-functions.R tests/testthat/test_Proteins-class.R tests/testthat/test_Proteins-ensembldb.R tests/testthat/test_Proteins-functions.R tests/testthat/test_Proteins-methods.R tests/testthat/test_fasta-functions.R tests/testthat/test_heavylabels-functions.R tests/testthat/test_mapToGenome-ensembldb.R tests/testthat/test_peptides-functions.R tests/testthat/test_utils.R
vignettes
vignettes/Pbase-data.Rmd
Pbase documentation built on May 31, 2017, 11:14 a.m.