R/endTreatment.R

In PepsNMR: Pre-process 1H-NMR FID signals

endTreatment <- function(name, begin_info, Signal_data, verbose=FALSE) {
  
  # begin_info: object outputted from beginTreatment
  
  
  # Formatting the entries and printing process time -----------------------
  if (verbose == TRUE){
    end_time <- proc.time()  # record it as soon as possible
    start_time <- begin_info[["start"]]
    delta_time <- end_time - start_time
    delta <- delta_time[]
    cat("End", name, "\n")
    cat("It lasted", round(delta["user.self"], 3), "s user time,", round(delta["sys.self"],3),
        "s system time and", round(delta["elapsed"], 3), "s elapsed time.\n")
  }
  
  if (begin_info[["force.real"]]) {
    # The imaginary part is left untouched
    i <- complex(real = 0, imaginary = 1)
    Signal_data <- Signal_data + i * Im(begin_info[["Original_data"]])
  }
  
  if (begin_info[["vec"]]) {
    Signal_data <- Signal_data[1, ]
  }
  
  # Return the formatted data and metadata entries --------------------
  return(Signal_data)
}