listPredPwr: List Predicted Power

In PowerExplorer: Power Estimation Tool for RNA-Seq and proteomics data

Description

show a top-list of predicted power in numerical order, or list the power selected genes/proteins.

Usage

listPredPwr(inputObject, decreasing = TRUE, top = 20, selected = NA)

Arguments

inputObject	the input inputObject.
decreasing	logical; TRUE, decreasing order; FALSE, increasing order.
top	the number of genes/proteins in the top list
selected	default as NA; specify as a list of geneID or protein ID to show power of a list of interested records.

Value

a top list of power / power of a list of interested genes or proteins for each sample size

Examples

data(exampleObject)
# show 10 top genes with high power (decreasing order)
listPredPwr(exampleObject, decreasing = TRUE, top = 10)

# show a list of interested genes
listPredPwr(exampleObject, 
            selected = c("ENSMUSG00000000303", 
                         "ENSMUSG00000087272", 
                         "ENSMUSG00000089921"))

PowerExplorer documentation built on April 28, 2020, 9:03 p.m.