cpDesign: Example of a cancer panel design export

In PrecisionTrialDrawer: A Tool to Analyze and Design NGS Based Custom Gene Panels

Description

Bed style export of cpObj

Usage

data(cpDesign)

Format

A design is a list composed by four elements:

GeneIntervals:

all CDS and CDS + UTR for all the genes in the panel

TargetIntervals:

all requested target regions (specific single mutations) divided and collapsed by gene symbol

FullGenes:

gene symbols of the genes considered for their full sequence

BedStylePanel:

the entire panel in bed format, merged by chromosome, start and end.

Source

Derived from running panelDesigner on cpObj

Examples

#Load cpDesign and show its structure
data(cpDesign)
str(cpDesign)

PrecisionTrialDrawer documentation built on Nov. 8, 2020, 8:17 p.m.