Description Usage Format Examples
A data frame containing a cancer panel data.frame to create a CancerPanel object
A data.frame of 6 columns:
drug: character vector of drug names or any chemical identifiers
gene_symbol: character vector HGNC official gene symbol
alteration: a character vector of accepted alteration type, 'SNV', 'CNA', 'expression', 'fusion'
exact_alteration: a character vector that identifies the exact alteration depending on alteration value. For example, alteration 'CNA' could correspond to exact_alteration 'amplification' or 'deletion'
mutation_specification: a character vector that must be empty if alteration is not 'SNV' and identifies the exact alteration in various format
group: a character vector that is useful for custom annotation of each single row in the panel. In the example is used to identify actionable from driver variants
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#Load panelexample and show its structure data(panelexample) str(panelexample)
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