all_counts: all_counts

Description Usage Format Details


A dataframe with all pubmed counts for the genes in the Dengue dataset in relation to the term "Dengue".




An object of class data.frame


Outcome of the test_score method of the pubscore class. As this function may take a long time, this dataset speeds up the vignette.

Contains: 3 columns: #tax_id: The reference ID for the taxon. All are 9606 (humans). GeneID: The Entrez ID code for a given gene. PubMedID: A PubMed ID for a paper that mentions the gene in the "Gene ID" column.

1335548 rows: gene-paper associations in the gene2pubmed database.

PubScore documentation built on Nov. 11, 2020, 2:01 a.m.