Pviz: Peptide Annotation and Data Visualization using Gviz

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Pviz adapts the Gviz package for protein sequences and data.

Author
Renan Sauteraud, Mike Jiang, Raphael Gottardo
Date of publication
None
Maintainer
Renan Sauteraud <rsautera@fhcrc.org>
License
Artistic-2.0
Version
1.8.0

View on Bioconductor

Man pages

ATrack
ATrack class
CladeTrack
CladeTrack
DTrack
DTrack class
plot_clade
Plot frequency of response for a single clade.
plot_inter
Plot frequency of response for each group
ProbeTrack
ProbeTrack
ProteinAxisTrack
ProteinAxisTrack
ProteinSequenceTrack
ProteinSequenceTrack

Files in this package

Pviz/DESCRIPTION
Pviz/NAMESPACE
Pviz/R
Pviz/R/AllClasses.R
Pviz/R/AllFunctions.R
Pviz/R/GenericsAndMethods.R
Pviz/R/pepStat_plots.R
Pviz/build
Pviz/build/vignette.rds
Pviz/inst
Pviz/inst/doc
Pviz/inst/doc/Pviz.R
Pviz/inst/doc/Pviz.Rnw
Pviz/inst/doc/Pviz.pdf
Pviz/inst/extdata
Pviz/inst/extdata/alignments
Pviz/inst/extdata/alignments/MuscleLANL_239_E660.fasta
Pviz/inst/extdata/alignments/Musclehxb2_7subtypes.fasta
Pviz/inst/extdata/alignments/Musclehxb2_vaccineInsert.fasta
Pviz/inst/extdata/alignments/SequenceHXB2-7Subtypes.fasta
Pviz/inst/extdata/alignments/SequenceHXB2_vaccineInsert.fasta
Pviz/inst/extdata/alignments/SequenceLANL_239_E660.fasta
Pviz/man
Pviz/man/ATrack.Rd
Pviz/man/CladeTrack.Rd
Pviz/man/DTrack.Rd
Pviz/man/ProbeTrack.Rd
Pviz/man/ProteinAxisTrack.Rd
Pviz/man/ProteinSequenceTrack.Rd
Pviz/man/plot_clade.Rd
Pviz/man/plot_inter.Rd
Pviz/vignettes
Pviz/vignettes/Pviz.Rnw