plot_inter: Plot frequency of response for each group

In Pviz: Peptide Annotation and Data Visualization using Gviz

Description

Plot an axis and the frequency of response of each group, averaged by peptides at each position.

Usage

plot_inter(restab, sequence = NULL, from = 0, to = max(restab$position),
  ...)

Arguments

restab	A data.frame. The result of a peptide microarray analysis, as returned by pepStat's restab function.
sequence	A character or an AAString. If not NULL, the sequence of the ProteinSequenceTrack to plot. It should be the sequence of the reference genome used in the peptideSet that generated the restab.
from	A numeric, the start coordinate of the plot.
to	A numeric, the end coordinate of the plot.
...	Aditional arguments to be passed to plotTracks.

Author(s)

Renan Sauteraud

See Also

restab, plot_clade, plotTracks

Examples

if(require(pepDat)){
  data(restab_aggregate)
  plot_inter(restab_aggregate)
}

Pviz documentation built on Nov. 8, 2020, 8:12 p.m.