showinfo: Show report of biclusters

In QUBIC: An R package for qualitative biclustering in support of gene co-expression analyses

Description

This function can make a report for biclusters.

Usage

showinfo(matrix, bic)

Arguments

matrix	microarray matrix
bic	array of biclusters

Value

Text of report

See Also

QUBIC

Examples

# Load microarray matrix
data(BicatYeast)
matrix <- BicatYeast[1:50, ];
res1 <- biclust::biclust(matrix, method=BCQU(), verbose = FALSE)
res2 <- biclust::biclust(matrix, method=BCCC())
res3 <- biclust::biclust(matrix, method=BCBimax())
# Show the report
showinfo(matrix, c(res1, res2, res3))

Example output

Loading required package: biclust
Loading required package: MASS
Loading required package: grid
Loading required package: colorspace
Loading required package: lattice
1: Call and Parameter
2: number of detected biclusters
3: nrow of the first bicluster
4: ncol of the first bicluster
5: area of the first bicluster
6: ratio (nrow / ncol) of the first bicluster
7: ratio (nrow / ncol) of the matrix
8: max nrow and corresponding bicluster
9: max ncol and corresponding bicluster
10: max area and corresponding bicluster
11: union of rows, (# and %)
12: union of columns, (# and %)
13: overlap of first two biclusters (row, col, area)


1	2	3	4	5	6	7	8	9	10	11	12	13	
biclust::biclust(x = matrix, method = BCQU(), verbose = FALSE)	16	20	6	120	3.333333	0.7142857	32 8	7 3	120 1	49 98	17 24.28571	17 4 68
biclust::biclust(x = matrix, method = BCCC())	1	50	70	3500	0.7142857	0.7142857	50 1	70 1	3500 1	50 100	1 100	
biclust::biclust(x = matrix, method = BCBimax())	100	6	2	12	3	0.7142857	37 69	7 41	96 92	49 98	19 27.14286	1 0 0

QUBIC documentation built on Nov. 8, 2020, 8:17 p.m.