DAVIDdemo-geneList: DAVID's website gene list example files

In RDAVIDWebService: An R Package for retrieving data from DAVID into R objects using Web Services API.

Description

These datasets correspond to the reports obtained using Show Gene List in the Database for Annotation, Visualization and Integrated Discovery (DAVID) website, using as input file the ones provided for demo purposes (demoList1 or demoList2) with default options.

Usage

  data(geneList1)

  data(geneList2)

Format

geneList1/2 are data.frame for demoList1/2 input ids, respectively, with the following columns.

ID

character with the Gene List ID present in DAVID knowledge base, in the submitted type. If more than one ids map to the same DAVID ID, the record is a comma separated character.

Name

character with the name of the gene as seen in DAVID knowledge base, in a comma separated fashion (if more than one ID maps to the same DAVID ID).

Species

factor with the name of the Specie.

Author(s)

Cristobal Fresno and Elmer A Fernandez

References

1. The Database for Annotation, Visualization and Integrated Discovery (david.abcc.ncifcrf.gov)

2. Huang, D. W.; Sherman, B. T.; Tan, Q.; Kir, J.; Liu, D.; Bryant, D.; Guo, Y.; Stephens, R.; Baseler, M. W.; Lane, H. C.; Lempicki, R. A. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res, Laboratory of Immunopathogenesis and Bioinformatics, SAIC-Frederick, Inc., National Cancer Institute at Frederick, MD 21702, USA., 2007, 35, W169-W175

3. DAVID Help page http://david.abcc.ncifcrf.gov/helps/functional_annotation.html#E3

See Also

Other DataExamples: annotationSummary1, annotationSummary2, demoList1, demoList2

RDAVIDWebService documentation built on Nov. 8, 2020, 8:05 p.m.