RDAVIDWebService: An R Package for retrieving data from DAVID into R objects using Web Services API.

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

Author
Cristobal Fresno and Elmer A. Fernandez
Date of publication
None
Maintainer
Cristobal Fresno <cfresno@bdmg.com.ar>
License
GPL (>=2)
Version
1.12.0
URLs

View on Bioconductor

Man pages

DAVIDClasses-categories
'categories' for the different DAVIDWebService package class...
DAVIDClasses-constructor
High level constructors for DAVIDWebService package's...
DAVIDClasses-genes
'genes' for the different DAVIDWebService package class...
DAVIDClasses-ids
'ids' for the different DAVIDWebService package class objects
DAVIDClasses-plot2D
Visualization of biological relationships
DAVIDClasses-show
Basic console output
DAVIDClasses-summary
Basic summary for DAVIDWebService package classes.
DAVIDCluster-class
class "DAVIDCluster
DAVIDCluster-methods
Methods for 'DAVIDCluster' class object
DAVIDdemo-annotationSummary
DAVID's website annotation summary example files
DAVIDdemo-annotationTable
DAVID's website functional annotation table example files
DAVIDdemo-clusterReport
DAVID's website gene/term cluster report example files
DAVIDdemo-functionalAnnotationChart
DAVID's website Functional Annotation Chart example files
DAVIDdemo-geneList
DAVID's website gene list example files
DAVIDdemo-ids
DAVID's website demoList1 example id files
DAVIDFunctionalAnnotationChart-class
class "DAVIDFunctionalAnnotationChart
DAVIDFunctionalAnnotationTable-class
class "DAVIDFunctionalAnnotationTable
DAVIDFunctionalAnnotationTable-methods
Methods for 'DAVIDFunctionalAnnotationTable' class object
DAVIDGeneCluster-class
class "DAVIDGeneCluster
DAVIDGenes-class
class "DAVIDGenes
DAVIDGenes-methods
Methods for 'DAVIDGenes' class object
DAVIDGODag-class
class "DAVIDGODag
DAVIDGODag-methods
Methods for 'DAVIDGODag' class object
DAVIDResult-class
class "DAVIDResult
DAVIDResult-getters
Getters for 'DAVIDResult' object
DAVIDTermCluster-class
class "DAVIDTermCluster
DAVIDWebService-accessors
Accessor methods for 'DAVIDWebService' class
DAVIDWebService-class
Main class to connect to DAVID Web Service
DAVIDWebService-methods
Methods to manipulate DAVID website
DAVIDWebService-package
An R Package for retrieving data from DAVID into R objects...
DAVIDWebService-reports
Obtain DAVID website reports

Files in this package

RDAVIDWebService/DESCRIPTION
RDAVIDWebService/NAMESPACE
RDAVIDWebService/NEWS
RDAVIDWebService/R
RDAVIDWebService/R/DAVIDClasses-categories.R
RDAVIDWebService/R/DAVIDClasses-constructor.R
RDAVIDWebService/R/DAVIDClasses-genes.R
RDAVIDWebService/R/DAVIDClasses-ids.R
RDAVIDWebService/R/DAVIDClasses-plot2D.R
RDAVIDWebService/R/DAVIDClasses-show.R
RDAVIDWebService/R/DAVIDClasses-summary.R
RDAVIDWebService/R/DAVIDCluster-class.R
RDAVIDWebService/R/DAVIDCluster-methods.R
RDAVIDWebService/R/DAVIDFunctionalAnnotationChart-class.R
RDAVIDWebService/R/DAVIDFunctionalAnnotationTable-class.R
RDAVIDWebService/R/DAVIDFunctionalAnnotationTable-methods.R
RDAVIDWebService/R/DAVIDGODag-class.R
RDAVIDWebService/R/DAVIDGODag-methods.R
RDAVIDWebService/R/DAVIDGeneCluster-class.R
RDAVIDWebService/R/DAVIDGenes-class.R
RDAVIDWebService/R/DAVIDGenes-methods.R
RDAVIDWebService/R/DAVIDResult-class.R
RDAVIDWebService/R/DAVIDResult-getters.R
RDAVIDWebService/R/DAVIDTermCluster-class.R
RDAVIDWebService/R/DAVIDWebService-accessors.R
RDAVIDWebService/R/DAVIDWebService-class.R
RDAVIDWebService/R/DAVIDWebService-methods.R
RDAVIDWebService/R/DAVIDWebService-reports.R
RDAVIDWebService/R/DAVIDdemo-annotationSummary.R
RDAVIDWebService/R/DAVIDdemo-annotationTable.R
RDAVIDWebService/R/DAVIDdemo-clusterReport.R
RDAVIDWebService/R/DAVIDdemo-functionalAnnotationChart.R
RDAVIDWebService/R/DAVIDdemo-geneList.R
RDAVIDWebService/R/DAVIDdemo-ids.R
RDAVIDWebService/R/RDAVIDWebService-package.R
RDAVIDWebService/build
RDAVIDWebService/build/vignette.rds
RDAVIDWebService/data
RDAVIDWebService/data/annotationSummary1.RData
RDAVIDWebService/data/annotationSummary2.RData
RDAVIDWebService/data/annotationTable1.RData
RDAVIDWebService/data/annotationTable2.RData
RDAVIDWebService/data/datalist
RDAVIDWebService/data/demoList1.RData
RDAVIDWebService/data/demoList2.RData
RDAVIDWebService/data/funChart1.RData
RDAVIDWebService/data/funChart2.RData
RDAVIDWebService/data/geneList1.RData
RDAVIDWebService/data/geneList2.RData
RDAVIDWebService/inst
RDAVIDWebService/inst/CITATION
RDAVIDWebService/inst/MD5
RDAVIDWebService/inst/doc
RDAVIDWebService/inst/doc/RDavidWS-vignette.R
RDAVIDWebService/inst/doc/RDavidWS-vignette.Rnw
RDAVIDWebService/inst/doc/RDavidWS-vignette.pdf
RDAVIDWebService/inst/files
RDAVIDWebService/inst/files/annotationSummaryReport1.tab.tar.gz
RDAVIDWebService/inst/files/annotationSummaryReport2.tab.tar.gz
RDAVIDWebService/inst/files/annotationTableReport1.tab.tar.gz
RDAVIDWebService/inst/files/annotationTableReport2.tab.tar.gz
RDAVIDWebService/inst/files/demoList1.txt.tar.gz
RDAVIDWebService/inst/files/demoList2.txt.tar.gz
RDAVIDWebService/inst/files/functionalAnnotationChartReport1.tab.tar.gz
RDAVIDWebService/inst/files/functionalAnnotationChartReport2.tab.tar.gz
RDAVIDWebService/inst/files/geneClusterReport1.tab.tar.gz
RDAVIDWebService/inst/files/geneClusterReport2.tab.tar.gz
RDAVIDWebService/inst/files/geneListReport1.tab.tar.gz
RDAVIDWebService/inst/files/geneListReport2.tab.tar.gz
RDAVIDWebService/inst/files/termClusterReport1.tab.tar.gz
RDAVIDWebService/inst/files/termClusterReport2.tab.tar.gz
RDAVIDWebService/inst/java
RDAVIDWebService/inst/java/DAVIDParser.jar
RDAVIDWebService/inst/java/DAVIDWebServiceClient.jar
RDAVIDWebService/inst/java/XmlSchema-1.4.3.jar
RDAVIDWebService/inst/java/XmlSchema-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/activation-1.1.jar
RDAVIDWebService/inst/java/activation-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/antlr-2.7.7.jar
RDAVIDWebService/inst/java/axiom-api-1.2.9.jar
RDAVIDWebService/inst/java/axiom-api-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/axiom-dom-1.2.9.jar
RDAVIDWebService/inst/java/axiom-dom-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/axiom-impl-1.2.9.jar
RDAVIDWebService/inst/java/axiom-impl-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/axis2-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/axis2-adb-1.5.2.jar
RDAVIDWebService/inst/java/axis2-adb-codegen-1.5.2.jar
RDAVIDWebService/inst/java/axis2-ant-plugin-1.5.2.jar
RDAVIDWebService/inst/java/axis2-clustering-1.5.2.jar
RDAVIDWebService/inst/java/axis2-codegen-1.5.2.jar
RDAVIDWebService/inst/java/axis2-corba-1.5.2.jar
RDAVIDWebService/inst/java/axis2-fastinfoset-1.5.2.jar
RDAVIDWebService/inst/java/axis2-java2wsdl-1.5.2.jar
RDAVIDWebService/inst/java/axis2-jaxbri-1.5.2.jar
RDAVIDWebService/inst/java/axis2-jaxws-1.5.2.jar
RDAVIDWebService/inst/java/axis2-jibx-1.5.2.jar
RDAVIDWebService/inst/java/axis2-json-1.5.2.jar
RDAVIDWebService/inst/java/axis2-kernel-1.5.2.jar
RDAVIDWebService/inst/java/axis2-metadata-1.5.2.jar
RDAVIDWebService/inst/java/axis2-mtompolicy-1.5.2.jar
RDAVIDWebService/inst/java/axis2-saaj-1.5.2.jar
RDAVIDWebService/inst/java/axis2-soapmonitor-servlet-1.5.2.jar
RDAVIDWebService/inst/java/axis2-spring-1.5.2.jar
RDAVIDWebService/inst/java/axis2-transport-http-1.5.2.jar
RDAVIDWebService/inst/java/axis2-transport-local-1.5.2.jar
RDAVIDWebService/inst/java/axis2-xmlbeans-1.5.2.jar
RDAVIDWebService/inst/java/bcel-5.1.jar
RDAVIDWebService/inst/java/bcel-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/commons-codec-1.3.jar
RDAVIDWebService/inst/java/commons-codec-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/commons-fileupload-1.2.jar
RDAVIDWebService/inst/java/commons-fileupload-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/commons-httpclient-3.1.jar
RDAVIDWebService/inst/java/commons-httpclient-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/commons-io-1.4.jar
RDAVIDWebService/inst/java/commons-io-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/commons-logging-1.1.1.jar
RDAVIDWebService/inst/java/commons-logging-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-annotation-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-annotation_1.0_spec-1.1.jar
RDAVIDWebService/inst/java/geronimo-jaxws-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-jaxws_2.1_spec-1.0.jar
RDAVIDWebService/inst/java/geronimo-jta-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-jta_1.1_spec-1.1.jar
RDAVIDWebService/inst/java/geronimo-saaj-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-saaj_1.3_spec-1.0.1.jar
RDAVIDWebService/inst/java/geronimo-stax-api-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-stax-api_1.0_spec-1.0.1.jar
RDAVIDWebService/inst/java/geronimo-ws-metadata-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-ws-metadata_2.0_spec-1.1.2.jar
RDAVIDWebService/inst/java/httpcore-4.0.jar
RDAVIDWebService/inst/java/httpcore-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jalopy-1.5rc3.jar
RDAVIDWebService/inst/java/jalopy-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jaxb-api-2.1.jar
RDAVIDWebService/inst/java/jaxb-api-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jaxb-impl-2.1.7.jar
RDAVIDWebService/inst/java/jaxb-impl-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jaxb-xjc-2.1.7.jar
RDAVIDWebService/inst/java/jaxb-xjc-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jaxen-1.1.1.jar
RDAVIDWebService/inst/java/jaxen-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jettison-1.0-RC2.jar
RDAVIDWebService/inst/java/jettison-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jibx-bind-1.2.1.jar
RDAVIDWebService/inst/java/jibx-bind-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jibx-run-1.2.1.jar
RDAVIDWebService/inst/java/jibx-run-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/juli-6.0.16.jar
RDAVIDWebService/inst/java/juli-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/junit.jar
RDAVIDWebService/inst/java/log4j-1.2.15.jar
RDAVIDWebService/inst/java/log4j-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/log4j.properties.patch.jar
RDAVIDWebService/inst/java/mail-1.4.jar
RDAVIDWebService/inst/java/mail-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/neethi-2.0.4.jar
RDAVIDWebService/inst/java/neethi-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/tribes-6.0.16.jar
RDAVIDWebService/inst/java/tribes-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/woden-api-1.0M8.jar
RDAVIDWebService/inst/java/woden-api-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/woden-impl-dom-1.0M8.jar
RDAVIDWebService/inst/java/woden-impl-dom-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/wsdl4j-1.6.2.jar
RDAVIDWebService/inst/java/wsdl4j-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/wstx-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/wstx-asl-3.2.9.jar
RDAVIDWebService/inst/java/xalan-2.7.0.jar
RDAVIDWebService/inst/java/xalan-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/xercesImpl-2.8.1.jar
RDAVIDWebService/inst/java/xercesImpl-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/xml-resolver-1.2.jar
RDAVIDWebService/inst/java/xml-resolver-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/xmlbeans-2.3.0.jar
RDAVIDWebService/inst/java/xmlbeans-LICENSE.txt.tar.gz
RDAVIDWebService/inst/javadoc
RDAVIDWebService/inst/javadoc/allclasses-frame.html
RDAVIDWebService/inst/javadoc/allclasses-noframe.html
RDAVIDWebService/inst/javadoc/constant-values.html
RDAVIDWebService/inst/javadoc/deprecated-list.html
RDAVIDWebService/inst/javadoc/help-doc.html
RDAVIDWebService/inst/javadoc/index-files
RDAVIDWebService/inst/javadoc/index-files/index-1.html
RDAVIDWebService/inst/javadoc/index-files/index-2.html
RDAVIDWebService/inst/javadoc/index-files/index-3.html
RDAVIDWebService/inst/javadoc/index-files/index-4.html
RDAVIDWebService/inst/javadoc/index-files/index-5.html
RDAVIDWebService/inst/javadoc/index.html
RDAVIDWebService/inst/javadoc/overview-tree.html
RDAVIDWebService/inst/javadoc/package-list
RDAVIDWebService/inst/javadoc/resources
RDAVIDWebService/inst/javadoc/resources/background.gif
RDAVIDWebService/inst/javadoc/resources/tab.gif
RDAVIDWebService/inst/javadoc/resources/titlebar.gif
RDAVIDWebService/inst/javadoc/resources/titlebar_end.gif
RDAVIDWebService/inst/javadoc/sample
RDAVIDWebService/inst/javadoc/sample/session
RDAVIDWebService/inst/javadoc/sample/session/client
RDAVIDWebService/inst/javadoc/sample/session/client/DAVIDParser.html
RDAVIDWebService/inst/javadoc/sample/session/client/class-use
RDAVIDWebService/inst/javadoc/sample/session/client/class-use/DAVIDParser.html
RDAVIDWebService/inst/javadoc/sample/session/client/package-frame.html
RDAVIDWebService/inst/javadoc/sample/session/client/package-summary.html
RDAVIDWebService/inst/javadoc/sample/session/client/package-tree.html
RDAVIDWebService/inst/javadoc/sample/session/client/package-use.html
RDAVIDWebService/inst/javadoc/stylesheet.css
RDAVIDWebService/man
RDAVIDWebService/man/DAVIDClasses-categories.Rd
RDAVIDWebService/man/DAVIDClasses-constructor.Rd
RDAVIDWebService/man/DAVIDClasses-genes.Rd
RDAVIDWebService/man/DAVIDClasses-ids.Rd
RDAVIDWebService/man/DAVIDClasses-plot2D.Rd
RDAVIDWebService/man/DAVIDClasses-show.Rd
RDAVIDWebService/man/DAVIDClasses-summary.Rd
RDAVIDWebService/man/DAVIDCluster-class.Rd
RDAVIDWebService/man/DAVIDCluster-methods.Rd
RDAVIDWebService/man/DAVIDFunctionalAnnotationChart-class.Rd
RDAVIDWebService/man/DAVIDFunctionalAnnotationTable-class.Rd
RDAVIDWebService/man/DAVIDFunctionalAnnotationTable-methods.Rd
RDAVIDWebService/man/DAVIDGODag-class.Rd
RDAVIDWebService/man/DAVIDGODag-methods.Rd
RDAVIDWebService/man/DAVIDGeneCluster-class.Rd
RDAVIDWebService/man/DAVIDGenes-class.Rd
RDAVIDWebService/man/DAVIDGenes-methods.Rd
RDAVIDWebService/man/DAVIDResult-class.Rd
RDAVIDWebService/man/DAVIDResult-getters.Rd
RDAVIDWebService/man/DAVIDTermCluster-class.Rd
RDAVIDWebService/man/DAVIDWebService-accessors.Rd
RDAVIDWebService/man/DAVIDWebService-class.Rd
RDAVIDWebService/man/DAVIDWebService-methods.Rd
RDAVIDWebService/man/DAVIDWebService-package.Rd
RDAVIDWebService/man/DAVIDWebService-reports.Rd
RDAVIDWebService/man/DAVIDdemo-annotationSummary.Rd
RDAVIDWebService/man/DAVIDdemo-annotationTable.Rd
RDAVIDWebService/man/DAVIDdemo-clusterReport.Rd
RDAVIDWebService/man/DAVIDdemo-functionalAnnotationChart.Rd
RDAVIDWebService/man/DAVIDdemo-geneList.Rd
RDAVIDWebService/man/DAVIDdemo-ids.Rd
RDAVIDWebService/vignettes
RDAVIDWebService/vignettes/RDavidWS-vignette.Rnw
RDAVIDWebService/vignettes/RDavidWS.bib
RDAVIDWebService/vignettes/RtoJava.pdf
RDAVIDWebService/vignettes/authblk.sty
RDAVIDWebService/vignettes/inR.pdf