RDAVIDWebService: An R Package for retrieving data from DAVID into R objects using Web Services API.

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

AuthorCristobal Fresno and Elmer A. Fernandez
Date of publicationNone
MaintainerCristobal Fresno <cfresno@bdmg.com.ar>
LicenseGPL (>=2)
Version1.12.0
http://www.bdmg.com.ar
http://david.abcc.ncifcrf.gov/

View on Bioconductor

Man pages

DAVIDClasses-categories: 'categories' for the different DAVIDWebService package class...

DAVIDClasses-constructor: High level constructors for DAVIDWebService package's...

DAVIDClasses-genes: 'genes' for the different DAVIDWebService package class...

DAVIDClasses-ids: 'ids' for the different DAVIDWebService package class objects

DAVIDClasses-plot2D: Visualization of biological relationships

DAVIDClasses-show: Basic console output

DAVIDClasses-summary: Basic summary for DAVIDWebService package classes.

DAVIDCluster-class: class "DAVIDCluster

DAVIDCluster-methods: Methods for 'DAVIDCluster' class object

DAVIDdemo-annotationSummary: DAVID's website annotation summary example files

DAVIDdemo-annotationTable: DAVID's website functional annotation table example files

DAVIDdemo-clusterReport: DAVID's website gene/term cluster report example files

DAVIDdemo-functionalAnnotationChart: DAVID's website Functional Annotation Chart example files

DAVIDdemo-geneList: DAVID's website gene list example files

DAVIDdemo-ids: DAVID's website demoList1 example id files

DAVIDFunctionalAnnotationChart-class: class "DAVIDFunctionalAnnotationChart

DAVIDFunctionalAnnotationTable-class: class "DAVIDFunctionalAnnotationTable

DAVIDFunctionalAnnotationTable-methods: Methods for 'DAVIDFunctionalAnnotationTable' class object

DAVIDGeneCluster-class: class "DAVIDGeneCluster

DAVIDGenes-class: class "DAVIDGenes

DAVIDGenes-methods: Methods for 'DAVIDGenes' class object

DAVIDGODag-class: class "DAVIDGODag

DAVIDGODag-methods: Methods for 'DAVIDGODag' class object

DAVIDResult-class: class "DAVIDResult

DAVIDResult-getters: Getters for 'DAVIDResult' object

DAVIDTermCluster-class: class "DAVIDTermCluster

DAVIDWebService-accessors: Accessor methods for 'DAVIDWebService' class

DAVIDWebService-class: Main class to connect to DAVID Web Service

DAVIDWebService-methods: Methods to manipulate DAVID website

DAVIDWebService-package: An R Package for retrieving data from DAVID into R objects...

DAVIDWebService-reports: Obtain DAVID website reports

Files in this package

RDAVIDWebService/DESCRIPTION
RDAVIDWebService/NAMESPACE
RDAVIDWebService/NEWS
RDAVIDWebService/R
RDAVIDWebService/R/DAVIDClasses-categories.R RDAVIDWebService/R/DAVIDClasses-constructor.R RDAVIDWebService/R/DAVIDClasses-genes.R RDAVIDWebService/R/DAVIDClasses-ids.R RDAVIDWebService/R/DAVIDClasses-plot2D.R RDAVIDWebService/R/DAVIDClasses-show.R RDAVIDWebService/R/DAVIDClasses-summary.R RDAVIDWebService/R/DAVIDCluster-class.R RDAVIDWebService/R/DAVIDCluster-methods.R RDAVIDWebService/R/DAVIDFunctionalAnnotationChart-class.R RDAVIDWebService/R/DAVIDFunctionalAnnotationTable-class.R RDAVIDWebService/R/DAVIDFunctionalAnnotationTable-methods.R RDAVIDWebService/R/DAVIDGODag-class.R RDAVIDWebService/R/DAVIDGODag-methods.R RDAVIDWebService/R/DAVIDGeneCluster-class.R RDAVIDWebService/R/DAVIDGenes-class.R RDAVIDWebService/R/DAVIDGenes-methods.R RDAVIDWebService/R/DAVIDResult-class.R RDAVIDWebService/R/DAVIDResult-getters.R RDAVIDWebService/R/DAVIDTermCluster-class.R RDAVIDWebService/R/DAVIDWebService-accessors.R RDAVIDWebService/R/DAVIDWebService-class.R RDAVIDWebService/R/DAVIDWebService-methods.R RDAVIDWebService/R/DAVIDWebService-reports.R RDAVIDWebService/R/DAVIDdemo-annotationSummary.R RDAVIDWebService/R/DAVIDdemo-annotationTable.R RDAVIDWebService/R/DAVIDdemo-clusterReport.R RDAVIDWebService/R/DAVIDdemo-functionalAnnotationChart.R RDAVIDWebService/R/DAVIDdemo-geneList.R RDAVIDWebService/R/DAVIDdemo-ids.R RDAVIDWebService/R/RDAVIDWebService-package.R
RDAVIDWebService/build
RDAVIDWebService/build/vignette.rds
RDAVIDWebService/data
RDAVIDWebService/data/annotationSummary1.RData
RDAVIDWebService/data/annotationSummary2.RData
RDAVIDWebService/data/annotationTable1.RData
RDAVIDWebService/data/annotationTable2.RData
RDAVIDWebService/data/datalist
RDAVIDWebService/data/demoList1.RData
RDAVIDWebService/data/demoList2.RData
RDAVIDWebService/data/funChart1.RData
RDAVIDWebService/data/funChart2.RData
RDAVIDWebService/data/geneList1.RData
RDAVIDWebService/data/geneList2.RData
RDAVIDWebService/inst
RDAVIDWebService/inst/CITATION
RDAVIDWebService/inst/MD5
RDAVIDWebService/inst/doc
RDAVIDWebService/inst/doc/RDavidWS-vignette.R
RDAVIDWebService/inst/doc/RDavidWS-vignette.Rnw
RDAVIDWebService/inst/doc/RDavidWS-vignette.pdf
RDAVIDWebService/inst/files
RDAVIDWebService/inst/files/annotationSummaryReport1.tab.tar.gz
RDAVIDWebService/inst/files/annotationSummaryReport2.tab.tar.gz
RDAVIDWebService/inst/files/annotationTableReport1.tab.tar.gz
RDAVIDWebService/inst/files/annotationTableReport2.tab.tar.gz
RDAVIDWebService/inst/files/demoList1.txt.tar.gz
RDAVIDWebService/inst/files/demoList2.txt.tar.gz
RDAVIDWebService/inst/files/functionalAnnotationChartReport1.tab.tar.gz
RDAVIDWebService/inst/files/functionalAnnotationChartReport2.tab.tar.gz
RDAVIDWebService/inst/files/geneClusterReport1.tab.tar.gz
RDAVIDWebService/inst/files/geneClusterReport2.tab.tar.gz
RDAVIDWebService/inst/files/geneListReport1.tab.tar.gz
RDAVIDWebService/inst/files/geneListReport2.tab.tar.gz
RDAVIDWebService/inst/files/termClusterReport1.tab.tar.gz
RDAVIDWebService/inst/files/termClusterReport2.tab.tar.gz
RDAVIDWebService/inst/java
RDAVIDWebService/inst/java/DAVIDParser.jar
RDAVIDWebService/inst/java/DAVIDWebServiceClient.jar
RDAVIDWebService/inst/java/XmlSchema-1.4.3.jar
RDAVIDWebService/inst/java/XmlSchema-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/activation-1.1.jar
RDAVIDWebService/inst/java/activation-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/antlr-2.7.7.jar
RDAVIDWebService/inst/java/axiom-api-1.2.9.jar
RDAVIDWebService/inst/java/axiom-api-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/axiom-dom-1.2.9.jar
RDAVIDWebService/inst/java/axiom-dom-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/axiom-impl-1.2.9.jar
RDAVIDWebService/inst/java/axiom-impl-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/axis2-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/axis2-adb-1.5.2.jar
RDAVIDWebService/inst/java/axis2-adb-codegen-1.5.2.jar
RDAVIDWebService/inst/java/axis2-ant-plugin-1.5.2.jar
RDAVIDWebService/inst/java/axis2-clustering-1.5.2.jar
RDAVIDWebService/inst/java/axis2-codegen-1.5.2.jar
RDAVIDWebService/inst/java/axis2-corba-1.5.2.jar
RDAVIDWebService/inst/java/axis2-fastinfoset-1.5.2.jar
RDAVIDWebService/inst/java/axis2-java2wsdl-1.5.2.jar
RDAVIDWebService/inst/java/axis2-jaxbri-1.5.2.jar
RDAVIDWebService/inst/java/axis2-jaxws-1.5.2.jar
RDAVIDWebService/inst/java/axis2-jibx-1.5.2.jar
RDAVIDWebService/inst/java/axis2-json-1.5.2.jar
RDAVIDWebService/inst/java/axis2-kernel-1.5.2.jar
RDAVIDWebService/inst/java/axis2-metadata-1.5.2.jar
RDAVIDWebService/inst/java/axis2-mtompolicy-1.5.2.jar
RDAVIDWebService/inst/java/axis2-saaj-1.5.2.jar
RDAVIDWebService/inst/java/axis2-soapmonitor-servlet-1.5.2.jar
RDAVIDWebService/inst/java/axis2-spring-1.5.2.jar
RDAVIDWebService/inst/java/axis2-transport-http-1.5.2.jar
RDAVIDWebService/inst/java/axis2-transport-local-1.5.2.jar
RDAVIDWebService/inst/java/axis2-xmlbeans-1.5.2.jar
RDAVIDWebService/inst/java/bcel-5.1.jar
RDAVIDWebService/inst/java/bcel-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/commons-codec-1.3.jar
RDAVIDWebService/inst/java/commons-codec-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/commons-fileupload-1.2.jar
RDAVIDWebService/inst/java/commons-fileupload-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/commons-httpclient-3.1.jar
RDAVIDWebService/inst/java/commons-httpclient-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/commons-io-1.4.jar
RDAVIDWebService/inst/java/commons-io-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/commons-logging-1.1.1.jar
RDAVIDWebService/inst/java/commons-logging-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-annotation-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-annotation_1.0_spec-1.1.jar
RDAVIDWebService/inst/java/geronimo-jaxws-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-jaxws_2.1_spec-1.0.jar
RDAVIDWebService/inst/java/geronimo-jta-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-jta_1.1_spec-1.1.jar
RDAVIDWebService/inst/java/geronimo-saaj-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-saaj_1.3_spec-1.0.1.jar
RDAVIDWebService/inst/java/geronimo-stax-api-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-stax-api_1.0_spec-1.0.1.jar
RDAVIDWebService/inst/java/geronimo-ws-metadata-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/geronimo-ws-metadata_2.0_spec-1.1.2.jar
RDAVIDWebService/inst/java/httpcore-4.0.jar
RDAVIDWebService/inst/java/httpcore-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jalopy-1.5rc3.jar
RDAVIDWebService/inst/java/jalopy-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jaxb-api-2.1.jar
RDAVIDWebService/inst/java/jaxb-api-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jaxb-impl-2.1.7.jar
RDAVIDWebService/inst/java/jaxb-impl-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jaxb-xjc-2.1.7.jar
RDAVIDWebService/inst/java/jaxb-xjc-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jaxen-1.1.1.jar
RDAVIDWebService/inst/java/jaxen-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jettison-1.0-RC2.jar
RDAVIDWebService/inst/java/jettison-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jibx-bind-1.2.1.jar
RDAVIDWebService/inst/java/jibx-bind-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/jibx-run-1.2.1.jar
RDAVIDWebService/inst/java/jibx-run-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/juli-6.0.16.jar
RDAVIDWebService/inst/java/juli-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/junit.jar
RDAVIDWebService/inst/java/log4j-1.2.15.jar
RDAVIDWebService/inst/java/log4j-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/log4j.properties.patch.jar
RDAVIDWebService/inst/java/mail-1.4.jar
RDAVIDWebService/inst/java/mail-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/neethi-2.0.4.jar
RDAVIDWebService/inst/java/neethi-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/tribes-6.0.16.jar
RDAVIDWebService/inst/java/tribes-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/woden-api-1.0M8.jar
RDAVIDWebService/inst/java/woden-api-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/woden-impl-dom-1.0M8.jar
RDAVIDWebService/inst/java/woden-impl-dom-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/wsdl4j-1.6.2.jar
RDAVIDWebService/inst/java/wsdl4j-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/wstx-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/wstx-asl-3.2.9.jar
RDAVIDWebService/inst/java/xalan-2.7.0.jar
RDAVIDWebService/inst/java/xalan-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/xercesImpl-2.8.1.jar
RDAVIDWebService/inst/java/xercesImpl-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/xml-resolver-1.2.jar
RDAVIDWebService/inst/java/xml-resolver-LICENSE.txt.tar.gz
RDAVIDWebService/inst/java/xmlbeans-2.3.0.jar
RDAVIDWebService/inst/java/xmlbeans-LICENSE.txt.tar.gz
RDAVIDWebService/inst/javadoc
RDAVIDWebService/inst/javadoc/allclasses-frame.html
RDAVIDWebService/inst/javadoc/allclasses-noframe.html
RDAVIDWebService/inst/javadoc/constant-values.html
RDAVIDWebService/inst/javadoc/deprecated-list.html
RDAVIDWebService/inst/javadoc/help-doc.html
RDAVIDWebService/inst/javadoc/index-files
RDAVIDWebService/inst/javadoc/index-files/index-1.html
RDAVIDWebService/inst/javadoc/index-files/index-2.html
RDAVIDWebService/inst/javadoc/index-files/index-3.html
RDAVIDWebService/inst/javadoc/index-files/index-4.html
RDAVIDWebService/inst/javadoc/index-files/index-5.html
RDAVIDWebService/inst/javadoc/index.html
RDAVIDWebService/inst/javadoc/overview-tree.html
RDAVIDWebService/inst/javadoc/package-list
RDAVIDWebService/inst/javadoc/resources
RDAVIDWebService/inst/javadoc/resources/background.gif
RDAVIDWebService/inst/javadoc/resources/tab.gif
RDAVIDWebService/inst/javadoc/resources/titlebar.gif
RDAVIDWebService/inst/javadoc/resources/titlebar_end.gif
RDAVIDWebService/inst/javadoc/sample
RDAVIDWebService/inst/javadoc/sample/session
RDAVIDWebService/inst/javadoc/sample/session/client
RDAVIDWebService/inst/javadoc/sample/session/client/DAVIDParser.html
RDAVIDWebService/inst/javadoc/sample/session/client/class-use
RDAVIDWebService/inst/javadoc/sample/session/client/class-use/DAVIDParser.html
RDAVIDWebService/inst/javadoc/sample/session/client/package-frame.html
RDAVIDWebService/inst/javadoc/sample/session/client/package-summary.html
RDAVIDWebService/inst/javadoc/sample/session/client/package-tree.html
RDAVIDWebService/inst/javadoc/sample/session/client/package-use.html
RDAVIDWebService/inst/javadoc/stylesheet.css
RDAVIDWebService/man
RDAVIDWebService/man/DAVIDClasses-categories.Rd RDAVIDWebService/man/DAVIDClasses-constructor.Rd RDAVIDWebService/man/DAVIDClasses-genes.Rd RDAVIDWebService/man/DAVIDClasses-ids.Rd RDAVIDWebService/man/DAVIDClasses-plot2D.Rd RDAVIDWebService/man/DAVIDClasses-show.Rd RDAVIDWebService/man/DAVIDClasses-summary.Rd RDAVIDWebService/man/DAVIDCluster-class.Rd RDAVIDWebService/man/DAVIDCluster-methods.Rd RDAVIDWebService/man/DAVIDFunctionalAnnotationChart-class.Rd RDAVIDWebService/man/DAVIDFunctionalAnnotationTable-class.Rd RDAVIDWebService/man/DAVIDFunctionalAnnotationTable-methods.Rd RDAVIDWebService/man/DAVIDGODag-class.Rd RDAVIDWebService/man/DAVIDGODag-methods.Rd RDAVIDWebService/man/DAVIDGeneCluster-class.Rd RDAVIDWebService/man/DAVIDGenes-class.Rd RDAVIDWebService/man/DAVIDGenes-methods.Rd RDAVIDWebService/man/DAVIDResult-class.Rd RDAVIDWebService/man/DAVIDResult-getters.Rd RDAVIDWebService/man/DAVIDTermCluster-class.Rd RDAVIDWebService/man/DAVIDWebService-accessors.Rd RDAVIDWebService/man/DAVIDWebService-class.Rd RDAVIDWebService/man/DAVIDWebService-methods.Rd RDAVIDWebService/man/DAVIDWebService-package.Rd RDAVIDWebService/man/DAVIDWebService-reports.Rd RDAVIDWebService/man/DAVIDdemo-annotationSummary.Rd RDAVIDWebService/man/DAVIDdemo-annotationTable.Rd RDAVIDWebService/man/DAVIDdemo-clusterReport.Rd RDAVIDWebService/man/DAVIDdemo-functionalAnnotationChart.Rd RDAVIDWebService/man/DAVIDdemo-geneList.Rd RDAVIDWebService/man/DAVIDdemo-ids.Rd
RDAVIDWebService/vignettes
RDAVIDWebService/vignettes/RDavidWS-vignette.Rnw
RDAVIDWebService/vignettes/RDavidWS.bib
RDAVIDWebService/vignettes/RtoJava.pdf
RDAVIDWebService/vignettes/authblk.sty
RDAVIDWebService/vignettes/inR.pdf

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