plotPosteriors: Draw scatter plots of posterior probabilities from both RIVER...

In RIVER: R package for RIVER (RNA-Informed Variant Effect on Regulation)

Description

plotPosteriors draws scatter plots of posterior probabilities from both RIVER GAM (genomic annotation model) in terms of outlier status.

Usage

plotPosteriors(postprobs, outliers)

Arguments

postprobs	Output of evaRIVER, which provides test posterior probabilities from both RIVER and GAM for all instances.
outliers	Outlier status of examples

Value

A figure of posteriors from RIVER (y-axis) and GAM (x-axis) models for ouliters and non-outliers separately

Author(s)

Yungil Kim, [e-mail]

Examples

dataInput <- getData(filename=system.file("extdata", "simulation_RIVER.gz",
        package = "RIVER"), ZscoreThrd=1.5)
postprobs <- appRIVER(dataInput)
plotPosteriors(postprobs, outliers=as.numeric(unlist(dataInput$Outlier))-1)

RIVER documentation built on Nov. 8, 2020, 6:54 p.m.