getAssayDataOfStudies: Get specific assay data of one or more studies from the...

In RImmPort: RImmPort: Enabling Ready-for-analysis Immunology Research Data

Description

Get specific assay data of one or more studies from the ImmPort database

Usage

getAssayDataOfStudies(study_ids, assay_type)

Arguments

study_ids	List of study indentifiers
assay_type	Assay Type

Value

a list of 1) domain data of specicifc assay technology and 2) any supplemental domain data of the studies

Author(s)

Ravi Shankar

Examples

library(DBI)
library(sqldf)
studies_dir <- system.file("extdata", "ImmPortStudies", package = "RImmPort")
db_dir <- file.path(studies_dir, "Db")
sqlite_conn <- dbConnect(SQLite(), dbname=file.path(db_dir, "ImmPort.sqlite"))
setImmPortDataSource(sqlite_conn)
elispot_l <- getAssayDataOfStudies("SDY139", "ELISPOT")
if (length(elispot_l) > 0)
  names(elispot_l)
head(elispot_l$zb_df)

RImmPort documentation built on Nov. 8, 2020, 5:54 p.m.