Files in RJMCMCNucleosomes

Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

src/NucleoDirichletPA.h

src/rjmcmcNucleo.cpp

src/SpaceNucleosome.h

src/PartitionAll.h

src/SimulationNucleo.h

src/Makevars.win

src/NucleoDirichlet.h

src/RcppExports.cpp

src/SimulationNucleoD.h

src/SpaceNucleosomeD.h

src/NucleoDirichlet.cpp

src/Nucleosome.h

src/Makevars

src/SegmentSeq.cpp

src/SegmentSeq.h

src/NucleoDirichletPA.cpp

src/RJMCMCNucleosomes_init.c

src/Nucleosome.cpp

data/reads_demo_01.RData

data/reads_demo_02.RData

data/RJMCMC_result.RData

data/syntheticNucleosomeReads.RData

R/print.rjmcmcNucleosomesMerge.R R/print.rjmcmcNucleosomes.R R/RcppExports.R R/print.rjmcmcNucleosomesBeforeAndAfterPostTreatment.R R/rjmcmcMethod.R R/rjmcmcMethodsIntern.R R/RJMCMCNucleosomes.R vignettes/RJMCMCNucleosomes.Rmd

vignettes/rjmcmc.bibtex

man/validateRJMCMCParameters.Rd man/rjmcmcCHR.Rd man/validateDirectoryParameters.Rd man/rjmcmcNucleo.Rd man/rjmcmc.Rd man/reads_demo_01.Rd man/validatePrepMergeParameters.Rd man/print.rjmcmcNucleosomesBeforeAndAfterPostTreatment.Rd man/print.rjmcmcNucleosomes.Rd man/postTreatment.Rd man/RJMCMC_result.Rd man/segmentation.Rd man/syntheticNucleosomeReads.Rd man/print.rjmcmcNucleosomesMerge.Rd man/mergeAllRDSFiles.Rd man/validateSegmentationParameters.Rd man/mergeAllRDSFilesFromDirectory.Rd man/runCHR.Rd man/validateRDSFilesParameters.Rd man/mergeRDSFiles.Rd man/plotNucleosomes.Rd man/reads_demo_02.Rd man/RJMCMCNucleosomes-package.Rd man/postMerge.Rd man/validatePlotNucleosomesParameters.Rd tests/runTests.R

inst/NEWS

inst/CITATION

inst/doc/RJMCMCNucleosomes.Rmd inst/doc/RJMCMCNucleosomes.R

inst/doc/RJMCMCNucleosomes.html

inst/extdata/RJMCMC_seg_02.RDS

inst/extdata/RJMCMC_seg_01.RDS

inst/extdata/RJMCMC_seg_03.RDS

inst/extdata/demo_vignette/segmentResult_5.rds

inst/extdata/demo_vignette/segmentResult_11.rds

inst/extdata/demo_vignette/segmentResult_9.rds

inst/extdata/demo_vignette/segmentResult_2.rds

inst/extdata/demo_vignette/segmentResult_8.rds

inst/extdata/demo_vignette/segmentResult_6.rds

inst/extdata/demo_vignette/segmentResult_7.rds

inst/extdata/demo_vignette/segmentResult_4.rds

inst/extdata/demo_vignette/segmentResult_10.rds

inst/extdata/demo_vignette/segmentResult_1.rds

inst/extdata/demo_vignette/segmentResult_3.rds

inst/unitTests/test_print_rjmcmcNucleosomes.R inst/unitTests/test_print_rjmcmcNucleosomesMerge.R inst/unitTests/test_rjmcmcMethodsIntern.R inst/unitTests/test_rjmcmcMethod.R inst/unitTests/test_print_rjmcmcNucleosomesBeforeAndAfterPostTreatment.R

RJMCMCNucleosomes documentation built on Nov. 8, 2020, 8:20 p.m.