mapperHits-class: Class "mapperHits" - holds collection of hits from MAPPER

In RMAPPER: R interface to the MAPPER database of transcription factor binding sites

Description

A data frame and some metadata about a MAPPER query from http://genome.ufl.edu/mapper. The data frame holds the predicted transcription factor binding sites from MAPPER.

Objects from the Class

Objects can be created by calls of the form new("mapperHits", ...). These are annotated data frames.

Slots

query:

character string that provides information on the query generating the object

hits:

Object of class "data.frame" providing information on the sequence and other properties of each hit.

Methods

query

signature(x = "mapperHits"): ...

hits

signature(x = "mapperHits"): ...

show

signature(object = "mapperHits"): ...

Author(s)

VJ Carey <[e-mail]>

References

http://genome.ufl.edu/mapper/

See Also

readMAPPER.

Examples

# see readMAPPER

RMAPPER documentation built on Sept. 12, 2016, 6:17 a.m.