RmbDefaultSettings: RMassBank settings

In RMassBank: Workflow to process tandem MS files and build MassBank records

Description

Load, set and reset settings for RMassBank.

Usage

loadRmbSettings(file_or_list) 

loadRmbSettingsFromEnv(env = .GlobalEnv)

RmbDefaultSettings()

RmbSettingsTemplate(target)

Arguments

file_or_list	The file (YML or R format) or R list with the settings to load.
target	The path where the template setting file should be stored.
env	The environment to load the settings from.

Details

RmbSettingsTemplate creates a template file in which you can adjust the settings as you like. Before using RMassBank, you must then load the settings file using loadRmbSettings. RmbDefaultSettings loads the default settings. loadRmbSettingsFromEnv loads the settings stored in env$RmbSettings, which is useful when reloading archives with saved settings inside.

Note: no settings are loaded upon loading MassBank! This is intended, so that one never forgets to load the correct settings.

The settings are described in RmbSettings.

Value

None.

Note

The default settings will not work for you unless you have, by chance, installed OpenBabel into the same directory as I have!

Author(s)

Michael Stravs

See Also

RmbSettings

Examples

 # Create a standard settings file and load it (unedited)
	RmbSettingsTemplate("mysettings.ini")
 loadRmbSettings("mysettings.ini")
 unlink("mysettings.ini")

RMassBank documentation built on Nov. 8, 2020, 6:06 p.m.