Files in RMassBank
Workflow to process tandem MS files and build MassBank records
.travis.yml
.BBSoptions
README.md
NAMESPACE
DESCRIPTION
build/vignette.rds
R/SpectrumMethods.R
R/RmbWorkspaceUpdate.R
R/fillback.R
R/tools.R
R/parseMbRecord.R
R/getSplash.R
R/webAccess.R
R/leMsmsRaw.R
R/createMassBank.R
R/SpectraSetMethods.R
R/RmbSpectrum2Update.R
R/parseMassBank.R
R/AggregateMethods.R
R/Isotopic_Annotation.R
R/alternateAnalyze.R
R/SpectrumClasses.R
R/settings_example.R
R/mergeSpectra.R
R/msmsRawExtensions.r
R/leCsvAccess.R
R/zzz.R
R/leMsMs.r
R/msmsRead.R
R/deprofile.R
R/formulaCalculator.R
R/readWriteMgfData.R
R/RmbWorkspace.R
R/validateMassBank.R
R/Generics.R
R/buildRecord.R
vignettes/RMassBank.Rmd
vignettes/RMassBankNonstandard.Rmd
vignettes/RMassBankXCMS.Rnw-disabled
vignettes/RMassBankXCMS.Rmd
vignettes/RMassBankNonstandard.Rnw-disabled
vignettes/graphics/proteowiz.PNG
man/getAnalyticalInfo.Rd
man/plotRecalibration.Rd
man/problematicPeaks.Rd
man/order.formula.Rd
man/getCompTox.Rd
man/makePeaksCache.Rd
man/parseMassBank.Rd
man/gatherData.Rd
man/gatherDataBabel.Rd
man/getCtsKey.Rd
man/makeRecalibration.Rd
man/dot-parseTitleString.Rd
man/recalibrate.addMS1data.Rd
man/addPeaks.Rd
man/findMz.Rd
man/CTS.externalIdSubset.Rd
man/spectraCount.Rd
man/findEIC.Rd
man/msmsWorkflow.Rd
man/combineMultiplicities.Rd
man/mbWorkflow.Rd
man/msmsRead.Rd
man/msmsRead.RAW.Rd
man/exportMassbank.Rd
man/findMsMsHR.ticms2.Rd
man/selectPeaks.Rd
man/archiveResults.Rd
man/newMbWorkspace.Rd
man/fillback.Rd
man/getCSID.Rd
man/filterPeaksMultiplicity.Rd
man/processProblematicPeaks.Rd
man/RmbDefaultSettings.Rd
man/to.limits.rcdk.Rd
man/toMassbank.Rd
man/checkSpectra.Rd
man/reanalyzeFailpeaks.Rd
man/makeMollist.Rd
man/dot-updateObject.RmbSpectrum2.formulaSource.Rd
man/RmbSettings.Rd
man/ppm.Rd
man/getCtsRecord.Rd
man/dot-buildRecord.RmbSpectraSet.Rd
man/getMolecule.Rd
man/setData.Rd
man/mergePeaks.df.Rd
man/aggregateSpectra.Rd
man/findMsMsHR.direct.Rd
man/recalibrate.Rd
man/addMB.Rd
man/validate.Rd
man/plotMbWorkspaces.Rd
man/loadList.Rd
man/getPcId.Rd
man/findMz.formula.Rd
man/loadInfolists.Rd
man/addPeaksManually.Rd
man/findProgress.Rd
man/gatherDataUnknown.Rd
man/selectSpectra.Rd
man/peaksUnmatched.Rd
man/annotator.default.Rd
man/findMass.Rd
man/checkIsotopes.Rd
man/msmsWorkspace-class.Rd
man/analyzeMsMs.Rd
man/getData.Rd
man/smiles2mass.Rd
man/findMsMsHRperxcms.Rd
man/progressBarHook.Rd
man/filterMultiplicity.Rd
man/is.valid.formula.Rd
man/cleanElnoise.Rd
man/newMsmsWorkspace.Rd
man/peaksMatched.Rd
man/add.formula.Rd
man/filterLowaccResults.Rd
man/toRMB.Rd
man/formulastring.to.list.Rd
man/findMsMsHR.Rd
man/updateSettings.Rd
man/filterPeakSatellites.Rd
man/createMolfile.Rd
man/dbe.Rd
man/CTS.externalIdTypes.Rd
man/parseMbRecord.Rd
man/flatten.Rd
man/mbWorkspace-class.Rd
man/getCactus.Rd
man/addProperty.Rd
man/deprofile.Rd
man/gatherPubChem.Rd
tests/doRUnit.R
inst/psi-ms.obo
inst/RMB_options.ini
inst/NEWS
inst/CITATION
inst/doc/RMassBank.Rmd
inst/doc/RMassBankNonstandard.Rmd
inst/doc/RMassBankNonstandard.html
inst/doc/RMassBank.R
inst/doc/RMassBankNonstandard.R
inst/doc/RMassBankXCMS.Rmd
inst/doc/RMassBank.html
inst/doc/RMassBankXCMS.R
inst/doc/RMassBankXCMS.html
inst/validationTests/runit.MSn.test.slashes.R
inst/validationTests/runit.MS2.test.R
inst/unitTests/test_ElecNoise_FormulaCalc.R
inst/unitTests/test_mzR.R
inst/unitTests/runTests.R
inst/unitTests/Makefile
inst/unitTests/test_NOPEAKS.R
