msmsWorkspace-class: Workspace for 'msmsWorkflow' data

Description Usage Arguments Details Author(s) See Also

Description

A workspace which stores input and output data for msmsWorkflow.

Usage

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## S4 method for signature 'msmsWorkspace'
show(object)

Arguments

object

The msmsWorkspace to display.

Details

Slots:

files

The input file names

spectra

The spectra per compound (RmbSpectraSet) extracted from the raw files

aggregated

A data.frame with an aggregated peak table from all spectra. Further columns are added during processing.

rc, rc.ms1

The recalibration curves generated in workflow step 4.

parent

For the workflow steps after 4: the parent workspace containing the state (spectra, aggregate) before recalibration, such that the workflow can be reprocessed from start.

archivename

The base name of the files the archive is stored to during the workflow.

settings

The RMassBank settings used during the workflow, if stored with the workspace.

#'

Methods:

show

Shows a brief summary of the object and processing progress.

Author(s)

Michael Stravs, Eawag <[email protected]>

See Also

msmsWorkflow


RMassBank documentation built on Nov. 17, 2017, 9:23 a.m.