Man pages for ROSeq
Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-Seq data
| computeDEG | Computes differential expression for the gene in question, by... |
| findParams | Finds the optimal values of parameters a and b that model the... |
| getd | Finds the double derivative of A |
| getDataStatistics | Evaluates statistics of the read counts corresponding to the... |
| getdu1da | Finds the first derivative of u1 with respect to a. This... |
| getdu1db | Finds the first derivative of u1 with respect to b. This... |
| getdu2da | Finds the first derivative of u2 with respect to a. This... |
| getdu2db | Finds the first derivative of u2 with respect to b. This... |
| getdvda | Finds the first derivative of v with respect to a. This... |
| getdvdb | Finds the first derivative of v with respect to b. This... |
| getI | Computes the Fisher Information Matrix |
| getu1 | Computes u1 |
| getu2 | Computes u2 |
| getv | Computes v |
| initiateAnalysis | Computes differential analysis for a given gene |
| L_Tung_single | Single cell samples for DE genes analysis |
| minimizeNLL | Minimizes the Negative Log-Likelihood by iterating across... |
| ROSeq | Modeling expression ranks for noise-tolerant differential... |
| TMMnormalization | TMM Normalization. |
