Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-Seq data

computeDEG | Computes differential expression for the gene in question, by... |

findParams | Finds the optimal values of parameters a and b that model the... |

getd | Finds the double derivative of A |

getDataStatistics | Evaluates statistics of the read counts corresponding to the... |

getdu1da | Finds the first derivative of u1 with respect to a. This... |

getdu1db | Finds the first derivative of u1 with respect to b. This... |

getdu2da | Finds the first derivative of u2 with respect to a. This... |

getdu2db | Finds the first derivative of u2 with respect to b. This... |

getdvda | Finds the first derivative of v with respect to a. This... |

getdvdb | Finds the first derivative of v with respect to b. This... |

getI | Computes the Fisher Information Matrix |

getu1 | Computes u1 |

getu2 | Computes u2 |

getv | Computes v |

initiateAnalysis | Computes differential analysis for a given gene |

L_Tung_single | Single cell samples for DE genes analysis |

minimizeNLL | Minimizes the Negative Log-Likelihood by iterating across... |

ROSeq | Modeling expression ranks for noise-tolerant differential... |

TMMnormalization | TMM Normalization. |

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