initiateAnalysis: Computes differential analysis for a given gene

In ROSeq: Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-Seq data

Description

Takes in the row index which corresponds to a gene and evaluates for differential expression across two cell types.

Usage

initiateAnalysis(gene, scdata, scgroups, classOne, classTwo)

Arguments

gene	The row index of the normalised and filtered, read count matrix
scdata	The normalised and filtered, read count matrix
scgroups	The location of the two sub-populations
classOne	The location of the first sub-population, for example, sample names as given as columns names
classTwo	The location of thesecond sub-population, for example, sample names as given as columns names

Value

combinedResults A vector containing 12 values (gr1: a, g1: b, gr1: A, gr1: number of bins, gr1: R2, gr2: a, gr2: b, gr2: A, gr2: number of bins, gr2: R2, T, p)

ROSeq documentation built on Feb. 18, 2021, 2 a.m.