plotDesign: Plot nested design structure.

In RUVcorr: Removal of unwanted variation for gene-gene correlations and related analysis

Description

plotDesign returns a plot with different color strips representing different factors relating to the study design. genes.

Usage

plotDesign(anno, Factors, anno.names = Factors, orderby = NULL)

Arguments

anno	A dataframe or matrix containing the annotation of the study.
Factors	A vector of factors that should be plotted.
anno.names	A vector containing the names, the default Factors.
orderby	A character describing an element in Factor by which the data should be ordered.

Value

plotDesign returns a plot.

Author(s)

Saskia Freytag

Examples

library(bladderbatch)
data(bladderdata)
expr.meta <- pData(bladderEset)
plotDesign(expr.meta, c("cancer", "outcome", "batch"), 
c("Diagnosis", "Outcome", "Batch"), orderby="batch")

RUVcorr documentation built on Nov. 8, 2020, 5:10 p.m.