RUVnormalize: RUV for normalization of expression array data

Share:

RUVnormalize is meant to remove unwanted variation from gene expression data when the factor of interest is not defined, e.g., to clean up a dataset for general use or to do any kind of unsupervised analysis.

Author
Laurent Jacob
Date of publication
None
Maintainer
Laurent Jacob <laurent.jacob@univ-lyon1.fr>
License
GPL-3
Version
1.8.0

View on Bioconductor

Man pages

clScore
Computes a distance between two partitions of the same data
iterativeRUV
Remove unwanted variation from a gene expression matrix using...
naiveRandRUV
Remove unwanted variation from a gene expression matrix using...
naiveReplicateRUV
Remove unwanted variation from a gene expression matrix using...
svdPlot
Plot the data projected into the space spanned by their first...

Files in this package

RUVnormalize/DESCRIPTION
RUVnormalize/NAMESPACE
RUVnormalize/NEWS
RUVnormalize/R
RUVnormalize/R/clScore.R
RUVnormalize/R/iterativeRUV.R
RUVnormalize/R/myPalette.R
RUVnormalize/R/naiveRandRUV.R
RUVnormalize/R/naiveReplicateRUV.R
RUVnormalize/R/svdPlot.R
RUVnormalize/build
RUVnormalize/build/vignette.rds
RUVnormalize/demo
RUVnormalize/demo/00Index
RUVnormalize/demo/gender.R
RUVnormalize/inst
RUVnormalize/inst/CITATION
RUVnormalize/inst/COPYING
RUVnormalize/inst/doc
RUVnormalize/inst/doc/RUVnormalize.R
RUVnormalize/inst/doc/RUVnormalize.Rnw
RUVnormalize/inst/doc/RUVnormalize.pdf
RUVnormalize/inst/extdata
RUVnormalize/inst/extdata/iterativeRUV.Rex
RUVnormalize/inst/extdata/naiveRandRUV.Rex
RUVnormalize/inst/extdata/naiveReplicateRUV.Rex
RUVnormalize/inst/system
RUVnormalize/inst/system/generateManPages.R
RUVnormalize/man
RUVnormalize/man/clScore.Rd
RUVnormalize/man/iterativeRUV.Rd
RUVnormalize/man/naiveRandRUV.Rd
RUVnormalize/man/naiveReplicateRUV.Rd
RUVnormalize/man/svdPlot.Rd
RUVnormalize/vignettes
RUVnormalize/vignettes/RUVnormalize.Rnw
RUVnormalize/vignettes/bibli.bib