RUVnormalize: RUV for normalization of expression array data
Version 1.10.0

RUVnormalize is meant to remove unwanted variation from gene expression data when the factor of interest is not defined, e.g., to clean up a dataset for general use or to do any kind of unsupervised analysis.

Browse man pages Browse package API and functions Browse package files

AuthorLaurent Jacob
Bioconductor views Normalization StatisticalMethod
Date of publicationNone
MaintainerLaurent Jacob <laurent.jacob@univ-lyon1.fr>
LicenseGPL-3
Version1.10.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("RUVnormalize")

Man pages

clScore: Computes a distance between two partitions of the same data
iterativeRUV: Remove unwanted variation from a gene expression matrix using...
naiveRandRUV: Remove unwanted variation from a gene expression matrix using...
naiveReplicateRUV: Remove unwanted variation from a gene expression matrix using...
svdPlot: Plot the data projected into the space spanned by their first...

Functions

clScore Man page Source code
iterativeRUV Man page Source code
myPalette Source code
naiveRandRUV Man page Source code
naiveReplicateRUV Man page Source code
svdPlot Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/clScore.R
R/iterativeRUV.R
R/myPalette.R
R/naiveRandRUV.R
R/naiveReplicateRUV.R
R/svdPlot.R
build
build/vignette.rds
demo
demo/00Index
demo/gender.R
inst
inst/CITATION
inst/COPYING
inst/doc
inst/doc/RUVnormalize.R
inst/doc/RUVnormalize.Rnw
inst/doc/RUVnormalize.pdf
inst/extdata
inst/extdata/iterativeRUV.Rex
inst/extdata/naiveRandRUV.Rex
inst/extdata/naiveReplicateRUV.Rex
inst/system
inst/system/generateManPages.R
man
man/clScore.Rd
man/iterativeRUV.Rd
man/naiveRandRUV.Rd
man/naiveReplicateRUV.Rd
man/svdPlot.Rd
vignettes
vignettes/RUVnormalize.Rnw
vignettes/bibli.bib
RUVnormalize documentation built on May 20, 2017, 10:21 p.m.