RUVnormalize: RUV for normalization of expression array data

RUVnormalize is meant to remove unwanted variation from gene expression data when the factor of interest is not defined, e.g., to clean up a dataset for general use or to do any kind of unsupervised analysis.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("RUVnormalize")
AuthorLaurent Jacob
Bioconductor views Normalization StatisticalMethod
Date of publicationNone
MaintainerLaurent Jacob <laurent.jacob@univ-lyon1.fr>
LicenseGPL-3
Version1.8.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/clScore.R R/iterativeRUV.R R/myPalette.R R/naiveRandRUV.R R/naiveReplicateRUV.R R/svdPlot.R
build
build/vignette.rds
demo
demo/00Index
demo/gender.R
inst
inst/CITATION
inst/COPYING
inst/doc
inst/doc/RUVnormalize.R
inst/doc/RUVnormalize.Rnw
inst/doc/RUVnormalize.pdf
inst/extdata
inst/extdata/iterativeRUV.Rex
inst/extdata/naiveRandRUV.Rex
inst/extdata/naiveReplicateRUV.Rex
inst/system
inst/system/generateManPages.R
man
man/clScore.Rd man/iterativeRUV.Rd man/naiveRandRUV.Rd man/naiveReplicateRUV.Rd man/svdPlot.Rd
vignettes
vignettes/RUVnormalize.Rnw
vignettes/bibli.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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