arab: Genomic Response to Brassinosteroid in Arabidopsis
In RankProd: Rank Product method for identifying differentially expressed genes with application in meta-analysis
Description
Usage
Value
References
Description
These data are from Affy ATH1 array experiments of genomic response to
brassinosteroid in Arabidopsis conducted by two laoratories.
The data set contains 500 random selected genes and 10 samples,
6 from lab 1 and 4 from lab 2. Data were pre-processed by RMA
Usage
1
Value
arab
matrix of gene expression levels of 500 genes
from 10 samples, rows correspond to genes and
columns to mRNA samples.
arab.cl
numeric vector encoding the treatment classes,
5 brassinosteroid-treated cases (code 1)
and 5 control cases (code 0)
arab.gnames
character vector containing the AffyID of
the 500 genes for the expression matrix arab
arab.origin
numeric vector encoding the origin of
the samples, 6 samples from lab 1 (code 1)
and 4 samples from lab 2 (code 2)
References
Nemhauser JL, Mockler TC, Chory J. Interdependency of
brassinosteroid and auxin signaling in Arabidopsis.
PLoS Biol. 2004 21460.
Microarray data from AtGenExpress
(http://arabidopsis.org/info/expression/ATGenExpress.jsp)
RankProd documentation built on Nov. 8, 2020, 8 p.m.
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Description Usage Value References
Description
These data are from Affy ATH1 array experiments of genomic response to brassinosteroid in Arabidopsis conducted by two laoratories. The data set contains 500 random selected genes and 10 samples, 6 from lab 1 and 4 from lab 2. Data were pre-processed by RMA
Usage
1 |
Value
arab |
matrix of gene expression levels of 500 genes from 10 samples, rows correspond to genes and columns to mRNA samples. |
arab.cl |
numeric vector encoding the treatment classes, 5 brassinosteroid-treated cases (code 1) and 5 control cases (code 0) |
arab.gnames |
character vector containing the AffyID of
the 500 genes for the expression matrix |
arab.origin |
numeric vector encoding the origin of the samples, 6 samples from lab 1 (code 1) and 4 samples from lab 2 (code 2) |
References
Nemhauser JL, Mockler TC, Chory J. Interdependency of
brassinosteroid and auxin signaling in Arabidopsis.
PLoS Biol. 2004 21460.
Microarray data from AtGenExpress
(http://arabidopsis.org/info/expression/ATGenExpress.jsp)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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