RankProd: Rank Product method for identifying differentially expressed genes with application in meta-analysis

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Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.

Author
Francesco Del Carratore <francesco.delcarratore@postgrad.manchester.ac.uk>, Andris Janckevics <andris.jankevics@gmail.com> Fangxin Hong <fxhong@jimmy.harvard.edu>, Ben Wittner <Wittner.Ben@mgh.harvard.edu>, Rainer Breitling <r.breitling@bio.gla.ac.uk>, and Florian Battke <battke@informatik.uni-tuebingen.de>
Date of publication
None
Maintainer
Francesco Del Carratore <francescodc87@gmail.com>
License
file LICENSE
Version
3.0.0

View on Bioconductor

Man pages

Apples
Metabolomics data on spiked apples
arab
Genomic Response to Brassinosteroid in Arabidopsis
golub
A subset of the Gene expression dataset from Golub et al....
lymphoma
Subset of the Intensity data for 8 cDNA slides with CLL and...
plotRP
Graphical Display of the Rank Product/Sum analysis
RankProd-internal
Internal RankProd functions
RankProducts
Rank Product/Rank Sum Analysis
RP
Rank Product Analysis
RPadvance
Advanced Rank Product Analysis
RP.advance
Advanced Rank Product/Rank Sum Analysis
RSadvance
Advanced Rank Sum Analysis
topGene
topGene

Files in this package

RankProd/DESCRIPTION
RankProd/LICENSE
RankProd/NAMESPACE
RankProd/R
RankProd/R/NAreplace.R
RankProd/R/OriginxyCall.R
RankProd/R/RP.R
RankProd/R/RPadvance_francesco.R
RankProd/R/RSadvance_francesco.R
RankProd/R/RankProd.R
RankProd/R/RankProducts_francesco_2.R
RankProd/R/RankProducts_francesco_advance.R
RankProd/R/computeOrirank.R
RankProd/R/dicesum.cdf.R
RankProd/R/dicesum.cdfaccurate.R
RankProd/R/dicesum.pdf.R
RankProd/R/genenames.R
RankProd/R/mzmatch.R.wrongvalues.R
RankProd/R/plotPFP.R
RankProd/R/plotRP_2.R
RankProd/R/rankprodbounds.R
RankProd/R/topGene.R
RankProd/R/xyCall.R
RankProd/build
RankProd/build/vignette.rds
RankProd/data
RankProd/data/Apples.rda
RankProd/data/arab.rda
RankProd/data/golub.rda
RankProd/data/lymphoma.rda
RankProd/inst
RankProd/inst/doc
RankProd/inst/doc/RankProd.R
RankProd/inst/doc/RankProd.Rnw
RankProd/inst/doc/RankProd.pdf
RankProd/man
RankProd/man/Apples.Rd
RankProd/man/RP.Rd
RankProd/man/RP.advance.Rd
RankProd/man/RPadvance.Rd
RankProd/man/RSadvance.Rd
RankProd/man/RankProd-internal.Rd
RankProd/man/RankProducts.Rd
RankProd/man/arab.Rd
RankProd/man/golub.Rd
RankProd/man/lymphoma.Rd
RankProd/man/plotRP.Rd
RankProd/man/topGene.Rd
RankProd/vignettes
RankProd/vignettes/RankProd.Rnw