RankProd: Rank Product method for identifying differentially expressed genes with application in meta-analysis

Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.

Package details

AuthorFrancesco Del Carratore <francesco.delcarratore@manchester.ac.uk>, Andris Jankevics <andris.jankevics@gmail.com> Fangxin Hong <fxhong@jimmy.harvard.edu>, Ben Wittner <Wittner.Ben@mgh.harvard.edu>, Rainer Breitling <rainer.breitling@manchester.ac.uk>, and Florian Battke <battke@informatik.uni-tuebingen.de>
Bioconductor views DifferentialExpression GeneExpression GeneSignaling Lipidomics Metabolomics Microarray Proteomics ResearchField Software StatisticalMethod SystemsBiology
MaintainerFrancesco Del Carratore <francescodc87@gmail.com>
Licensefile LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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RankProd documentation built on Nov. 8, 2020, 8 p.m.